Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03275 and BWI76_RS03280 are separated by 294 nucleotides BWI76_RS03280 and BWI76_RS03285 are separated by 61 nucleotides BWI76_RS03285 and BWI76_RS03290 overlap by 35 nucleotides BWI76_RS03290 and BWI76_RS03295 are separated by 72 nucleotides
BWI76_RS03275: BWI76_RS03275 - cyclomaltodextrin glucanotransferase, at 676,215 to 678,182
_RS03275
BWI76_RS03280: BWI76_RS03280 - IS630 family transposase, at 678,477 to 678,791
_RS03280
BWI76_RS03285: BWI76_RS03285 - hypothetical protein, at 678,853 to 679,071
_RS03285
BWI76_RS03290: BWI76_RS03290 - hypothetical protein, at 679,037 to 679,962
_RS03290
BWI76_RS03295: BWI76_RS03295 - transposase, at 680,035 to 680,298
_RS03295
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 677.862 kb on + strand, within BWI76_RS03275 at 677.862 kb on + strand, within BWI76_RS03275 at 677.862 kb on + strand, within BWI76_RS03275 at 677.879 kb on + strand, within BWI76_RS03275 at 677.881 kb on + strand, within BWI76_RS03275 at 677.881 kb on + strand, within BWI76_RS03275 at 677.881 kb on + strand, within BWI76_RS03275 at 677.881 kb on + strand, within BWI76_RS03275 at 677.881 kb on + strand, within BWI76_RS03275 at 677.882 kb on + strand, within BWI76_RS03275 at 677.882 kb on + strand, within BWI76_RS03275 at 677.882 kb on + strand, within BWI76_RS03275 at 677.882 kb on + strand, within BWI76_RS03275 at 677.882 kb on + strand, within BWI76_RS03275 at 677.882 kb on + strand, within BWI76_RS03275 at 677.884 kb on + strand, within BWI76_RS03275 at 677.889 kb on + strand, within BWI76_RS03275 at 677.889 kb on - strand, within BWI76_RS03275 at 677.889 kb on - strand, within BWI76_RS03275 at 677.889 kb on - strand, within BWI76_RS03275 at 677.889 kb on - strand, within BWI76_RS03275 at 677.889 kb on - strand, within BWI76_RS03275 at 677.889 kb on - strand, within BWI76_RS03275 at 677.892 kb on - strand, within BWI76_RS03275 at 677.896 kb on + strand, within BWI76_RS03275 at 677.896 kb on + strand, within BWI76_RS03275 at 677.896 kb on + strand, within BWI76_RS03275 at 677.918 kb on + strand, within BWI76_RS03275 at 677.976 kb on + strand, within BWI76_RS03275 at 677.982 kb on + strand, within BWI76_RS03275 at 678.023 kb on + strand at 678.023 kb on + strand at 678.029 kb on - strand at 678.037 kb on + strand at 678.037 kb on + strand at 678.037 kb on + strand at 678.044 kb on + strand at 678.044 kb on + strand at 678.044 kb on + strand at 678.056 kb on + strand at 678.066 kb on + strand at 678.066 kb on + strand at 678.074 kb on - strand at 678.074 kb on - strand at 678.074 kb on - strand at 678.104 kb on + strand at 678.106 kb on + strand at 678.111 kb on + strand at 678.140 kb on + strand at 678.148 kb on - strand at 678.151 kb on + strand at 678.155 kb on + strand at 678.279 kb on + strand at 678.291 kb on - strand at 678.291 kb on - strand at 678.296 kb on - strand at 678.305 kb on - strand at 678.307 kb on + strand at 678.307 kb on + strand at 678.307 kb on + strand at 678.307 kb on + strand at 678.312 kb on + strand at 678.312 kb on + strand at 678.312 kb on + strand at 678.312 kb on + strand at 678.315 kb on - strand at 678.315 kb on - strand at 678.315 kb on - strand at 678.315 kb on - strand at 678.320 kb on - strand at 678.331 kb on + strand at 678.331 kb on + strand at 678.339 kb on - strand at 678.344 kb on - strand at 678.345 kb on + strand at 678.352 kb on - strand at 678.362 kb on - strand at 678.378 kb on - strand at 678.409 kb on - strand at 678.411 kb on + strand at 678.419 kb on - strand at 678.419 kb on - strand at 678.420 kb on + strand at 678.424 kb on + strand at 678.424 kb on - strand at 678.429 kb on + strand at 678.446 kb on + strand at 678.467 kb on + strand at 678.467 kb on + strand at 678.467 kb on + strand at 678.476 kb on - strand at 678.480 kb on - strand at 678.487 kb on - strand at 678.490 kb on + strand at 678.490 kb on + strand at 678.490 kb on + strand at 678.492 kb on + strand at 678.492 kb on + strand at 678.492 kb on + strand at 678.492 kb on + strand at 678.492 kb on + strand at 678.492 kb on + strand at 678.493 kb on - strand at 678.497 kb on + strand at 678.498 kb on + strand at 678.498 kb on - strand at 678.500 kb on - strand at 678.500 kb on - strand at 678.500 kb on - strand at 678.500 kb on - strand at 678.500 kb on - strand at 678.500 kb on - strand at 678.500 kb on - strand at 678.512 kb on - strand, within BWI76_RS03280 at 678.559 kb on + strand, within BWI76_RS03280 at 678.565 kb on + strand, within BWI76_RS03280 at 678.571 kb on + strand, within BWI76_RS03280 at 678.571 kb on + strand, within BWI76_RS03280 at 678.571 kb on + strand, within BWI76_RS03280 at 678.571 kb on + strand, within BWI76_RS03280 at 678.571 kb on + strand, within BWI76_RS03280 at 678.579 kb on - strand, within BWI76_RS03280 at 678.579 kb on - strand, within BWI76_RS03280 at 678.579 kb on - strand, within BWI76_RS03280 at 678.579 kb on - strand, within BWI76_RS03280 at 678.579 kb on - strand, within BWI76_RS03280 at 678.582 kb on + strand, within BWI76_RS03280 at 678.595 kb on - strand, within BWI76_RS03280 at 678.614 kb on + strand, within BWI76_RS03280 at 678.616 kb on + strand, within BWI76_RS03280 at 678.655 kb on + strand, within BWI76_RS03280 at 678.664 kb on + strand, within BWI76_RS03280 at 678.672 kb on - strand, within BWI76_RS03280 at 678.672 kb on - strand, within BWI76_RS03280 at 678.687 kb on - strand, within BWI76_RS03280 at 678.697 kb on - strand, within BWI76_RS03280 at 678.747 kb on + strand, within BWI76_RS03280 at 678.767 kb on - strand at 678.815 kb on - strand at 678.826 kb on + strand at 678.826 kb on + strand at 678.827 kb on + strand at 678.849 kb on + strand at 678.851 kb on + strand at 678.859 kb on - strand at 678.941 kb on - strand, within BWI76_RS03285 at 678.976 kb on + strand, within BWI76_RS03285 at 678.976 kb on + strand, within BWI76_RS03285 at 678.977 kb on + strand, within BWI76_RS03285 at 678.985 kb on - strand, within BWI76_RS03285 at 678.985 kb on - strand, within BWI76_RS03285 at 678.985 kb on - strand, within BWI76_RS03285 at 678.991 kb on - strand, within BWI76_RS03285 at 679.074 kb on - strand at 679.074 kb on - strand at 679.117 kb on + strand at 679.117 kb on + strand at 679.137 kb on - strand, within BWI76_RS03290 at 679.137 kb on - strand, within BWI76_RS03290 at 679.145 kb on + strand, within BWI76_RS03290 at 679.187 kb on - strand, within BWI76_RS03290 at 679.241 kb on - strand, within BWI76_RS03290 at 679.251 kb on + strand, within BWI76_RS03290 at 679.269 kb on + strand, within BWI76_RS03290 at 679.272 kb on - strand at 679.369 kb on + strand, within BWI76_RS03290 at 679.507 kb on + strand, within BWI76_RS03290 at 679.546 kb on + strand, within BWI76_RS03290 at 679.657 kb on + strand, within BWI76_RS03290 at 679.657 kb on + strand, within BWI76_RS03290 at 679.880 kb on + strand at 679.980 kb on + strand at 679.989 kb on + strand at 679.998 kb on - strand at 680.006 kb on + strand at 680.015 kb on + strand at 680.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 677,862 + BWI76_RS03275 0.84 +1.2 677,862 + BWI76_RS03275 0.84 -0.2 677,862 + BWI76_RS03275 0.84 +0.7 677,879 + BWI76_RS03275 0.85 -2.3 677,881 + BWI76_RS03275 0.85 -0.6 677,881 + BWI76_RS03275 0.85 -1.4 677,881 + BWI76_RS03275 0.85 -1.3 677,881 + BWI76_RS03275 0.85 -0.6 677,881 + BWI76_RS03275 0.85 -1.7 677,882 + BWI76_RS03275 0.85 -1.4 677,882 + BWI76_RS03275 0.85 +0.6 677,882 + BWI76_RS03275 0.85 -0.6 677,882 + BWI76_RS03275 0.85 -0.5 677,882 + BWI76_RS03275 0.85 +0.7 677,882 + BWI76_RS03275 0.85 -0.2 677,884 + BWI76_RS03275 0.85 +1.3 677,889 + BWI76_RS03275 0.85 +2.0 677,889 - BWI76_RS03275 0.85 -1.5 677,889 - BWI76_RS03275 0.85 -1.2 677,889 - BWI76_RS03275 0.85 -1.7 677,889 - BWI76_RS03275 0.85 +1.2 677,889 - BWI76_RS03275 0.85 +0.9 677,889 - BWI76_RS03275 0.85 -1.5 677,892 - BWI76_RS03275 0.85 -1.5 677,896 + BWI76_RS03275 0.85 -2.4 677,896 + BWI76_RS03275 0.85 -0.9 677,896 + BWI76_RS03275 0.85 -1.3 677,918 + BWI76_RS03275 0.87 +1.2 677,976 + BWI76_RS03275 0.89 -2.3 677,982 + BWI76_RS03275 0.90 -1.9 678,023 + +0.1 678,023 + +0.2 678,029 - -1.5 678,037 + -1.7 678,037 + +0.2 678,037 + +1.8 678,044 + +1.2 678,044 + -1.5 678,044 + -0.6 678,056 + +1.6 678,066 + -0.4 678,066 + -0.7 678,074 - -0.2 678,074 - +1.2 678,074 - +1.6 678,104 + +0.1 678,106 + +0.0 678,111 + -0.3 678,140 + +0.2 678,148 - +2.5 678,151 + -0.2 678,155 + +0.7 678,279 + +0.9 678,291 - +0.8 678,291 - +0.2 678,296 - +0.4 678,305 - -0.6 678,307 + -1.3 678,307 + -0.3 678,307 + -0.8 678,307 + -2.6 678,312 + -0.2 678,312 + +0.9 678,312 + -0.2 678,312 + -2.2 678,315 - -0.8 678,315 - +0.6 678,315 - +0.1 678,315 - +0.8 678,320 - -2.1 678,331 + -1.9 678,331 + -2.1 678,339 - -2.2 678,344 - -0.6 678,345 + -0.2 678,352 - -0.2 678,362 - +0.4 678,378 - +0.1 678,409 - +0.9 678,411 + -3.3 678,419 - +1.9 678,419 - -0.5 678,420 + -1.5 678,424 + -1.6 678,424 - -1.2 678,429 + -1.8 678,446 + -2.0 678,467 + -3.2 678,467 + -1.0 678,467 + -0.2 678,476 - +2.2 678,480 - -1.8 678,487 - +0.5 678,490 + -0.0 678,490 + +0.8 678,490 + -2.6 678,492 + -0.5 678,492 + -0.1 678,492 + -2.8 678,492 + +1.7 678,492 + -0.2 678,492 + -0.8 678,493 - -1.2 678,497 + -0.7 678,498 + -0.5 678,498 - -0.1 678,500 - +3.2 678,500 - -1.5 678,500 - -1.2 678,500 - +1.0 678,500 - -0.1 678,500 - -0.6 678,500 - +0.3 678,512 - BWI76_RS03280 0.11 -0.7 678,559 + BWI76_RS03280 0.26 +0.3 678,565 + BWI76_RS03280 0.28 -2.9 678,571 + BWI76_RS03280 0.30 -0.1 678,571 + BWI76_RS03280 0.30 +0.1 678,571 + BWI76_RS03280 0.30 -0.2 678,571 + BWI76_RS03280 0.30 +0.8 678,571 + BWI76_RS03280 0.30 -0.9 678,579 - BWI76_RS03280 0.32 -0.3 678,579 - BWI76_RS03280 0.32 -0.5 678,579 - BWI76_RS03280 0.32 -0.2 678,579 - BWI76_RS03280 0.32 +0.5 678,579 - BWI76_RS03280 0.32 +1.2 678,582 + BWI76_RS03280 0.33 -0.3 678,595 - BWI76_RS03280 0.37 -0.3 678,614 + BWI76_RS03280 0.43 +1.5 678,616 + BWI76_RS03280 0.44 -1.0 678,655 + BWI76_RS03280 0.57 -0.5 678,664 + BWI76_RS03280 0.59 +1.6 678,672 - BWI76_RS03280 0.62 +0.8 678,672 - BWI76_RS03280 0.62 -0.1 678,687 - BWI76_RS03280 0.67 +0.9 678,697 - BWI76_RS03280 0.70 +0.8 678,747 + BWI76_RS03280 0.86 -2.3 678,767 - -0.2 678,815 - +0.5 678,826 + -0.6 678,826 + -1.0 678,827 + -2.2 678,849 + +0.4 678,851 + -1.3 678,859 - +0.3 678,941 - BWI76_RS03285 0.40 -0.6 678,976 + BWI76_RS03285 0.56 -0.2 678,976 + BWI76_RS03285 0.56 +1.0 678,977 + BWI76_RS03285 0.57 +1.9 678,985 - BWI76_RS03285 0.60 +1.6 678,985 - BWI76_RS03285 0.60 +1.7 678,985 - BWI76_RS03285 0.60 +0.7 678,991 - BWI76_RS03285 0.63 +1.6 679,074 - -0.8 679,074 - +0.6 679,117 + -2.8 679,117 + -1.4 679,137 - BWI76_RS03290 0.11 +0.7 679,137 - BWI76_RS03290 0.11 -1.8 679,145 + BWI76_RS03290 0.12 -1.1 679,187 - BWI76_RS03290 0.16 +0.5 679,241 - BWI76_RS03290 0.22 +0.1 679,251 + BWI76_RS03290 0.23 +0.6 679,269 + BWI76_RS03290 0.25 -2.7 679,272 - +2.7 679,369 + BWI76_RS03290 0.36 -0.1 679,507 + BWI76_RS03290 0.51 +0.9 679,546 + BWI76_RS03290 0.55 -0.7 679,657 + BWI76_RS03290 0.67 -1.0 679,657 + BWI76_RS03290 0.67 -1.3 679,880 + -0.6 679,980 + +0.7 679,989 + +0.2 679,998 - -0.8 680,006 + +0.0 680,015 + -0.8 680,020 + +0.6
Or see this region's nucleotide sequence