Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2875

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2874 and DvMF_2875 are separated by 335 nucleotidesDvMF_2875 and smpB are separated by 160 nucleotides DvMF_2874: DvMF_2874 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,629,878 to 3,631,284 _2874 DvMF_2875: DvMF_2875 - FAD linked oxidase domain protein (RefSeq), at 3,631,620 to 3,633,044 _2875 DvMF_2876: smpB - SsrA-binding protein (RefSeq), at 3,633,205 to 3,633,666 smpB Position (kb) 3631 3632 3633 3634Strain fitness (log2 ratio) -1 0 1 2at 3630.926 kb on - strand, within DvMF_2874at 3631.110 kb on + strand, within DvMF_2874at 3631.192 kb on - strandat 3631.463 kb on + strandat 3631.832 kb on + strand, within DvMF_2875at 3631.962 kb on - strand, within DvMF_2875at 3631.977 kb on - strand, within DvMF_2875at 3632.023 kb on - strand, within DvMF_2875at 3632.253 kb on + strand, within DvMF_2875at 3632.261 kb on - strand, within DvMF_2875at 3632.261 kb on - strand, within DvMF_2875at 3632.496 kb on + strand, within DvMF_2875at 3632.678 kb on + strand, within DvMF_2875at 3632.686 kb on - strand, within DvMF_2875at 3632.804 kb on + strand, within DvMF_2875at 3633.059 kb on - strandat 3633.203 kb on + strandat 3633.203 kb on + strandat 3633.203 kb on + strandat 3633.211 kb on - strandat 3633.928 kb on - strandat 3633.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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3,630,926 - DvMF_2874 0.74 +0.7
3,631,110 + DvMF_2874 0.88 +0.2
3,631,192 - +0.0
3,631,463 + +0.6
3,631,832 + DvMF_2875 0.15 +0.8
3,631,962 - DvMF_2875 0.24 +0.3
3,631,977 - DvMF_2875 0.25 +0.8
3,632,023 - DvMF_2875 0.28 +0.2
3,632,253 + DvMF_2875 0.44 +0.3
3,632,261 - DvMF_2875 0.45 +0.9
3,632,261 - DvMF_2875 0.45 +0.9
3,632,496 + DvMF_2875 0.61 +0.2
3,632,678 + DvMF_2875 0.74 +1.8
3,632,686 - DvMF_2875 0.75 +1.0
3,632,804 + DvMF_2875 0.83 +0.4
3,633,059 - +0.2
3,633,203 + -0.4
3,633,203 + +0.2
3,633,203 + -0.4
3,633,211 - +0.8
3,633,928 - +0.6
3,633,991 + +0.6

Or see this region's nucleotide sequence