Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2681

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2680 and DvMF_2681 are separated by 348 nucleotidesDvMF_2681 and DvMF_2682 are separated by 85 nucleotides DvMF_2680: DvMF_2680 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 3,387,457 to 3,388,110 _2680 DvMF_2681: DvMF_2681 - ribonuclease BN (RefSeq), at 3,388,459 to 3,390,144 _2681 DvMF_2682: DvMF_2682 - Membrane-bound lytic murein transglycosylase B-like protein (RefSeq), at 3,390,230 to 3,391,501 _2682 Position (kb) 3388 3389 3390 3391Strain fitness (log2 ratio) -1 0 1at 3387.981 kb on - strand, within DvMF_2680at 3388.023 kb on - strand, within DvMF_2680at 3388.248 kb on - strandat 3388.474 kb on + strandat 3388.546 kb on + strandat 3388.791 kb on - strand, within DvMF_2681at 3388.817 kb on + strand, within DvMF_2681at 3388.825 kb on - strand, within DvMF_2681at 3389.323 kb on - strand, within DvMF_2681at 3389.604 kb on + strand, within DvMF_2681at 3389.870 kb on - strand, within DvMF_2681at 3389.951 kb on - strand, within DvMF_2681at 3390.029 kb on + strandat 3390.129 kb on + strandat 3390.137 kb on - strandat 3390.253 kb on + strandat 3390.297 kb on + strandat 3390.302 kb on + strandat 3390.331 kb on + strandat 3390.344 kb on + strandat 3390.344 kb on + strandat 3390.637 kb on + strand, within DvMF_2682at 3390.644 kb on + strand, within DvMF_2682at 3390.878 kb on + strand, within DvMF_2682

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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3,387,981 - DvMF_2680 0.80 +0.5
3,388,023 - DvMF_2680 0.87 +1.1
3,388,248 - +0.7
3,388,474 + +0.8
3,388,546 + +0.7
3,388,791 - DvMF_2681 0.20 +0.7
3,388,817 + DvMF_2681 0.21 +0.7
3,388,825 - DvMF_2681 0.22 +0.5
3,389,323 - DvMF_2681 0.51 +0.6
3,389,604 + DvMF_2681 0.68 +0.4
3,389,870 - DvMF_2681 0.84 +1.2
3,389,951 - DvMF_2681 0.88 +0.7
3,390,029 + +0.4
3,390,129 + +0.4
3,390,137 - +0.4
3,390,253 + +0.6
3,390,297 + +1.3
3,390,302 + +0.5
3,390,331 + +0.6
3,390,344 + +0.7
3,390,344 + +0.6
3,390,637 + DvMF_2682 0.32 +0.5
3,390,644 + DvMF_2682 0.33 +0.3
3,390,878 + DvMF_2682 0.51 +0.0

Or see this region's nucleotide sequence