Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2507

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2506 and DvMF_2507 are separated by 152 nucleotidesDvMF_2507 and DvMF_2508 are separated by 376 nucleotides DvMF_2506: DvMF_2506 - selenocysteine-specific translation elongation factor (RefSeq), at 3,159,706 to 3,161,658 _2506 DvMF_2507: DvMF_2507 - hypothetical protein (RefSeq), at 3,161,811 to 3,162,074 _2507 DvMF_2508: DvMF_2508 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 3,162,451 to 3,164,721 _2508 Position (kb) 3161 3162 3163Strain fitness (log2 ratio) -1 0 1at 3160.980 kb on + strand, within DvMF_2506at 3160.988 kb on - strand, within DvMF_2506at 3161.299 kb on - strand, within DvMF_2506at 3161.707 kb on + strandat 3162.136 kb on + strandat 3162.261 kb on - strandat 3162.366 kb on + strandat 3162.374 kb on - strandat 3162.374 kb on - strandat 3162.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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3,160,980 + DvMF_2506 0.65 +0.8
3,160,988 - DvMF_2506 0.66 -0.8
3,161,299 - DvMF_2506 0.82 -0.2
3,161,707 + +0.6
3,162,136 + +0.6
3,162,261 - +0.2
3,162,366 + +0.7
3,162,374 - +0.1
3,162,374 - +0.2
3,162,428 - +0.3

Or see this region's nucleotide sequence