Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2480

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2479 and DvMF_2480 are separated by 313 nucleotidesDvMF_2480 and DvMF_2481 are separated by 123 nucleotidesDvMF_2481 and DvMF_2482 are separated by 395 nucleotides DvMF_2479: DvMF_2479 - beta-lactamase domain protein (RefSeq), at 3,125,789 to 3,126,997 _2479 DvMF_2480: DvMF_2480 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 3,127,311 to 3,127,469 _2480 DvMF_2481: DvMF_2481 - desulfoferrodoxin (RefSeq), at 3,127,593 to 3,127,967 _2481 DvMF_2482: DvMF_2482 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,128,363 to 3,130,384 _2482 Position (kb) 3127 3128Strain fitness (log2 ratio) -1 0 1at 3126.555 kb on + strand, within DvMF_2479at 3126.604 kb on + strand, within DvMF_2479at 3126.628 kb on - strand, within DvMF_2479at 3126.674 kb on + strand, within DvMF_2479at 3126.821 kb on - strand, within DvMF_2479at 3127.103 kb on + strandat 3127.264 kb on + strandat 3127.284 kb on + strandat 3127.292 kb on - strandat 3127.309 kb on + strandat 3127.359 kb on - strand, within DvMF_2480at 3127.792 kb on - strand, within DvMF_2481at 3127.941 kb on + strandat 3127.941 kb on + strandat 3128.110 kb on + strandat 3128.147 kb on - strandat 3128.352 kb on - strandat 3128.354 kb on + strandat 3128.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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3,126,555 + DvMF_2479 0.63 +0.4
3,126,604 + DvMF_2479 0.67 +0.7
3,126,628 - DvMF_2479 0.69 +1.0
3,126,674 + DvMF_2479 0.73 +0.6
3,126,821 - DvMF_2479 0.85 +0.4
3,127,103 + +0.3
3,127,264 + -0.1
3,127,284 + +1.1
3,127,292 - -0.2
3,127,309 + +0.3
3,127,359 - DvMF_2480 0.30 +1.7
3,127,792 - DvMF_2481 0.53 +0.4
3,127,941 + +1.2
3,127,941 + +0.4
3,128,110 + -0.5
3,128,147 - +1.2
3,128,352 - +0.6
3,128,354 + +0.3
3,128,362 - +0.4

Or see this region's nucleotide sequence