Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1866

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1865 and DvMF_1866 are separated by 156 nucleotidesDvMF_1866 and DvMF_1867 are separated by 136 nucleotidesDvMF_1867 and DvMF_1868 are separated by 4 nucleotides DvMF_1865: DvMF_1865 - acetate kinase (RefSeq), at 2,288,798 to 2,290,012 _1865 DvMF_1866: DvMF_1866 - DRTGG domain protein (RefSeq), at 2,290,169 to 2,291,230 _1866 DvMF_1867: DvMF_1867 - protein of unknown function DUF162 (RefSeq), at 2,291,367 to 2,291,996 _1867 DvMF_1868: DvMF_1868 - protein of unknown function DUF162 (RefSeq), at 2,292,001 to 2,294,151 _1868 Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -2 -1 0 1at 2290.136 kb on + strandat 2290.349 kb on - strand, within DvMF_1866at 2290.548 kb on + strand, within DvMF_1866at 2290.572 kb on + strand, within DvMF_1866at 2290.697 kb on - strand, within DvMF_1866at 2290.884 kb on - strand, within DvMF_1866at 2291.130 kb on + strandat 2291.138 kb on - strandat 2291.149 kb on + strandat 2291.369 kb on - strandat 2291.369 kb on - strandat 2291.537 kb on + strand, within DvMF_1867at 2291.544 kb on + strand, within DvMF_1867at 2291.563 kb on - strand, within DvMF_1867at 2291.950 kb on - strandat 2292.084 kb on - strandat 2292.213 kb on + strandat 2292.221 kb on - strand, within DvMF_1868at 2292.221 kb on - strand, within DvMF_1868

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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2,290,136 + -0.1
2,290,349 - DvMF_1866 0.17 -0.2
2,290,548 + DvMF_1866 0.36 -1.8
2,290,572 + DvMF_1866 0.38 -1.7
2,290,697 - DvMF_1866 0.50 -0.5
2,290,884 - DvMF_1866 0.67 -0.2
2,291,130 + -1.2
2,291,138 - -1.8
2,291,149 + -0.7
2,291,369 - +1.6
2,291,369 - +0.3
2,291,537 + DvMF_1867 0.27 +0.8
2,291,544 + DvMF_1867 0.28 -0.2
2,291,563 - DvMF_1867 0.31 -0.2
2,291,950 - +0.6
2,292,084 - +0.8
2,292,213 + -0.7
2,292,221 - DvMF_1868 0.10 +0.5
2,292,221 - DvMF_1868 0.10 +0.7

Or see this region's nucleotide sequence