Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1839

Experiment: L-Methionine and L-Threonine as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1838 and DvMF_1839 are separated by 57 nucleotidesDvMF_1839 and DvMF_1840 are separated by 329 nucleotides DvMF_1838: DvMF_1838 - Radical SAM domain protein (RefSeq), at 2,247,369 to 2,248,844 _1838 DvMF_1839: DvMF_1839 - Methyltransferase type 11 (RefSeq), at 2,248,902 to 2,250,038 _1839 DvMF_1840: DvMF_1840 - CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (RefSeq), at 2,250,368 to 2,251,525 _1840 Position (kb) 2248 2249 2250 2251Strain fitness (log2 ratio) -1 0 1at 2247.916 kb on - strand, within DvMF_1838at 2248.023 kb on + strand, within DvMF_1838at 2248.144 kb on + strand, within DvMF_1838at 2248.152 kb on - strand, within DvMF_1838at 2248.157 kb on - strand, within DvMF_1838at 2248.235 kb on - strand, within DvMF_1838at 2248.274 kb on + strand, within DvMF_1838at 2248.302 kb on + strand, within DvMF_1838at 2248.341 kb on + strand, within DvMF_1838at 2248.421 kb on - strand, within DvMF_1838at 2248.436 kb on - strand, within DvMF_1838at 2248.728 kb on - strandat 2248.834 kb on + strandat 2248.841 kb on - strandat 2249.217 kb on - strand, within DvMF_1839at 2249.398 kb on - strand, within DvMF_1839at 2249.484 kb on + strand, within DvMF_1839at 2249.484 kb on + strand, within DvMF_1839at 2249.492 kb on - strand, within DvMF_1839at 2249.492 kb on - strand, within DvMF_1839at 2249.750 kb on + strand, within DvMF_1839at 2249.816 kb on + strand, within DvMF_1839at 2249.818 kb on - strand, within DvMF_1839at 2249.828 kb on - strand, within DvMF_1839at 2249.906 kb on + strand, within DvMF_1839at 2250.041 kb on - strandat 2250.780 kb on - strand, within DvMF_1840at 2250.889 kb on + strand, within DvMF_1840at 2250.960 kb on + strand, within DvMF_1840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
remove
2,247,916 - DvMF_1838 0.37 +0.5
2,248,023 + DvMF_1838 0.44 +0.3
2,248,144 + DvMF_1838 0.53 +0.2
2,248,152 - DvMF_1838 0.53 +0.2
2,248,157 - DvMF_1838 0.53 +0.9
2,248,235 - DvMF_1838 0.59 -0.4
2,248,274 + DvMF_1838 0.61 +0.3
2,248,302 + DvMF_1838 0.63 +0.3
2,248,341 + DvMF_1838 0.66 +0.4
2,248,421 - DvMF_1838 0.71 -0.5
2,248,436 - DvMF_1838 0.72 +0.9
2,248,728 - -0.4
2,248,834 + +0.1
2,248,841 - +0.2
2,249,217 - DvMF_1839 0.28 +0.6
2,249,398 - DvMF_1839 0.44 +0.6
2,249,484 + DvMF_1839 0.51 +0.1
2,249,484 + DvMF_1839 0.51 +0.3
2,249,492 - DvMF_1839 0.52 +0.4
2,249,492 - DvMF_1839 0.52 +0.6
2,249,750 + DvMF_1839 0.75 +0.8
2,249,816 + DvMF_1839 0.80 +1.5
2,249,818 - DvMF_1839 0.81 +1.3
2,249,828 - DvMF_1839 0.81 +1.0
2,249,906 + DvMF_1839 0.88 +0.8
2,250,041 - +1.0
2,250,780 - DvMF_1840 0.36 +0.7
2,250,889 + DvMF_1840 0.45 +0.4
2,250,960 + DvMF_1840 0.51 +0.5

Or see this region's nucleotide sequence