Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1747

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1746 and DvMF_1747 are separated by 120 nucleotidesDvMF_1747 and DvMF_1748 overlap by 4 nucleotides DvMF_1746: DvMF_1746 - Anthranilate synthase (RefSeq), at 2,132,961 to 2,134,523 _1746 DvMF_1747: DvMF_1747 - Prephenate dehydrogenase (RefSeq), at 2,134,644 to 2,135,435 _1747 DvMF_1748: DvMF_1748 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,135,432 to 2,136,784 _1748 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -3 -2 -1 0 1at 2133.727 kb on - strand, within DvMF_1746at 2133.774 kb on + strand, within DvMF_1746at 2133.788 kb on + strand, within DvMF_1746at 2133.851 kb on + strand, within DvMF_1746at 2133.859 kb on - strand, within DvMF_1746at 2133.938 kb on + strand, within DvMF_1746at 2133.948 kb on + strand, within DvMF_1746at 2133.988 kb on + strand, within DvMF_1746at 2134.006 kb on - strand, within DvMF_1746at 2134.132 kb on + strand, within DvMF_1746at 2134.333 kb on - strand, within DvMF_1746at 2134.348 kb on + strand, within DvMF_1746

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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2,133,727 - DvMF_1746 0.49 -2.4
2,133,774 + DvMF_1746 0.52 -1.7
2,133,788 + DvMF_1746 0.53 -1.9
2,133,851 + DvMF_1746 0.57 -3.5
2,133,859 - DvMF_1746 0.57 -1.1
2,133,938 + DvMF_1746 0.63 -1.0
2,133,948 + DvMF_1746 0.63 -2.9
2,133,988 + DvMF_1746 0.66 -2.2
2,134,006 - DvMF_1746 0.67 -2.1
2,134,132 + DvMF_1746 0.75 -2.4
2,134,333 - DvMF_1746 0.88 -2.2
2,134,348 + DvMF_1746 0.89 -2.9

Or see this region's nucleotide sequence