Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1743

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1741 and DvMF_1742 are separated by 39 nucleotidesDvMF_1742 and DvMF_1743 overlap by 4 nucleotidesDvMF_1743 and DvMF_1744 overlap by 8 nucleotides DvMF_1741: DvMF_1741 - tryptophan synthase subunit beta (RefSeq), at 2,128,334 to 2,129,518 _1741 DvMF_1742: DvMF_1742 - Phosphoribosylanthranilate isomerase (RefSeq), at 2,129,558 to 2,130,235 _1742 DvMF_1743: DvMF_1743 - Indole-3-glycerol-phosphate synthase (RefSeq), at 2,130,232 to 2,131,197 _1743 DvMF_1744: DvMF_1744 - anthranilate phosphoribosyltransferase (RefSeq), at 2,131,190 to 2,132,206 _1744 Position (kb) 2130 2131 2132Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2129.248 kb on + strand, within DvMF_1741at 2129.251 kb on - strand, within DvMF_1741at 2129.335 kb on + strand, within DvMF_1741at 2129.368 kb on + strand, within DvMF_1741at 2129.528 kb on - strandat 2129.646 kb on + strand, within DvMF_1742at 2129.666 kb on + strand, within DvMF_1742at 2129.865 kb on + strand, within DvMF_1742at 2130.138 kb on + strand, within DvMF_1742at 2130.178 kb on + strandat 2130.405 kb on - strand, within DvMF_1743at 2130.452 kb on - strand, within DvMF_1743at 2130.675 kb on + strand, within DvMF_1743at 2130.840 kb on + strand, within DvMF_1743at 2130.892 kb on + strand, within DvMF_1743at 2130.909 kb on + strand, within DvMF_1743at 2131.049 kb on + strand, within DvMF_1743at 2131.261 kb on + strandat 2131.283 kb on + strandat 2131.283 kb on + strandat 2131.291 kb on - strandat 2131.338 kb on + strand, within DvMF_1744at 2131.496 kb on - strand, within DvMF_1744at 2131.611 kb on - strand, within DvMF_1744at 2131.828 kb on - strand, within DvMF_1744at 2131.897 kb on - strand, within DvMF_1744

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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2,129,248 + DvMF_1741 0.77 -5.0
2,129,251 - DvMF_1741 0.77 -4.1
2,129,335 + DvMF_1741 0.84 -3.0
2,129,368 + DvMF_1741 0.87 -2.2
2,129,528 - -0.2
2,129,646 + DvMF_1742 0.13 -4.5
2,129,666 + DvMF_1742 0.16 -3.6
2,129,865 + DvMF_1742 0.45 -4.6
2,130,138 + DvMF_1742 0.86 -4.6
2,130,178 + -1.4
2,130,405 - DvMF_1743 0.18 +1.7
2,130,452 - DvMF_1743 0.23 -3.1
2,130,675 + DvMF_1743 0.46 -4.2
2,130,840 + DvMF_1743 0.63 -4.2
2,130,892 + DvMF_1743 0.68 -1.8
2,130,909 + DvMF_1743 0.70 -4.8
2,131,049 + DvMF_1743 0.85 -4.0
2,131,261 + -5.0
2,131,283 + -3.9
2,131,283 + -4.9
2,131,291 - -6.3
2,131,338 + DvMF_1744 0.15 -3.2
2,131,496 - DvMF_1744 0.30 -8.2
2,131,611 - DvMF_1744 0.41 -5.2
2,131,828 - DvMF_1744 0.63 -3.7
2,131,897 - DvMF_1744 0.70 -5.3

Or see this region's nucleotide sequence