Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1741

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrpA and DvMF_1741 overlap by 4 nucleotidesDvMF_1741 and DvMF_1742 are separated by 39 nucleotidesDvMF_1742 and DvMF_1743 overlap by 4 nucleotides DvMF_1740: trpA - tryptophan synthase subunit alpha (RefSeq), at 2,127,525 to 2,128,337 trpA DvMF_1741: DvMF_1741 - tryptophan synthase subunit beta (RefSeq), at 2,128,334 to 2,129,518 _1741 DvMF_1742: DvMF_1742 - Phosphoribosylanthranilate isomerase (RefSeq), at 2,129,558 to 2,130,235 _1742 DvMF_1743: DvMF_1743 - Indole-3-glycerol-phosphate synthase (RefSeq), at 2,130,232 to 2,131,197 _1743 Position (kb) 2128 2129 2130Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2127.519 kb on - strandat 2127.524 kb on - strandat 2127.747 kb on + strand, within trpAat 2128.203 kb on + strand, within trpAat 2128.412 kb on - strandat 2128.451 kb on - strandat 2128.583 kb on - strand, within DvMF_1741at 2128.616 kb on - strand, within DvMF_1741at 2128.646 kb on + strand, within DvMF_1741at 2128.703 kb on - strand, within DvMF_1741at 2128.726 kb on + strand, within DvMF_1741at 2128.951 kb on - strand, within DvMF_1741at 2128.973 kb on - strand, within DvMF_1741at 2129.072 kb on + strand, within DvMF_1741at 2129.092 kb on + strand, within DvMF_1741at 2129.248 kb on + strand, within DvMF_1741at 2129.251 kb on - strand, within DvMF_1741at 2129.335 kb on + strand, within DvMF_1741at 2129.368 kb on + strand, within DvMF_1741at 2129.528 kb on - strandat 2129.646 kb on + strand, within DvMF_1742at 2129.666 kb on + strand, within DvMF_1742at 2129.865 kb on + strand, within DvMF_1742at 2130.138 kb on + strand, within DvMF_1742at 2130.178 kb on + strandat 2130.405 kb on - strand, within DvMF_1743at 2130.452 kb on - strand, within DvMF_1743

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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2,127,519 - +0.8
2,127,524 - -0.2
2,127,747 + trpA DvMF_1740 0.27 -4.2
2,128,203 + trpA DvMF_1740 0.83 -5.1
2,128,412 - -3.0
2,128,451 - -1.8
2,128,583 - DvMF_1741 0.21 -4.1
2,128,616 - DvMF_1741 0.24 -1.2
2,128,646 + DvMF_1741 0.26 -4.3
2,128,703 - DvMF_1741 0.31 -5.3
2,128,726 + DvMF_1741 0.33 -4.6
2,128,951 - DvMF_1741 0.52 -5.9
2,128,973 - DvMF_1741 0.54 -3.5
2,129,072 + DvMF_1741 0.62 -5.2
2,129,092 + DvMF_1741 0.64 -3.2
2,129,248 + DvMF_1741 0.77 -5.0
2,129,251 - DvMF_1741 0.77 -4.1
2,129,335 + DvMF_1741 0.84 -3.0
2,129,368 + DvMF_1741 0.87 -2.2
2,129,528 - -0.2
2,129,646 + DvMF_1742 0.13 -4.5
2,129,666 + DvMF_1742 0.16 -3.6
2,129,865 + DvMF_1742 0.45 -4.6
2,130,138 + DvMF_1742 0.86 -4.6
2,130,178 + -1.4
2,130,405 - DvMF_1743 0.18 +1.7
2,130,452 - DvMF_1743 0.23 -3.1

Or see this region's nucleotide sequence