Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1375

Experiment: L-Methionine and L-Threonine as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1374 and DvMF_1375 overlap by 32 nucleotidesDvMF_1375 and DvMF_1376 are separated by 359 nucleotides DvMF_1374: DvMF_1374 - putative PAS/PAC sensor protein (RefSeq), at 1,682,438 to 1,683,664 _1374 DvMF_1375: DvMF_1375 - histidine kinase (RefSeq), at 1,683,633 to 1,684,976 _1375 DvMF_1376: DvMF_1376 - phosphomethylpyrimidine kinase (RefSeq), at 1,685,336 to 1,686,184 _1376 Position (kb) 1683 1684 1685Strain fitness (log2 ratio) -1 0 1at 1682.795 kb on - strand, within DvMF_1374at 1682.838 kb on + strand, within DvMF_1374at 1682.957 kb on + strand, within DvMF_1374at 1682.965 kb on - strand, within DvMF_1374at 1682.993 kb on - strand, within DvMF_1374at 1683.059 kb on + strand, within DvMF_1374at 1683.139 kb on + strand, within DvMF_1374at 1683.147 kb on - strand, within DvMF_1374at 1683.471 kb on + strand, within DvMF_1374at 1683.545 kb on + strandat 1683.845 kb on - strand, within DvMF_1375at 1683.950 kb on - strand, within DvMF_1375at 1683.957 kb on + strand, within DvMF_1375at 1684.064 kb on - strand, within DvMF_1375at 1684.102 kb on - strand, within DvMF_1375at 1684.194 kb on - strand, within DvMF_1375at 1684.231 kb on + strand, within DvMF_1375at 1684.239 kb on - strand, within DvMF_1375at 1684.267 kb on - strand, within DvMF_1375at 1684.391 kb on + strand, within DvMF_1375at 1684.576 kb on - strand, within DvMF_1375at 1684.605 kb on - strand, within DvMF_1375at 1684.630 kb on - strand, within DvMF_1375at 1684.765 kb on - strand, within DvMF_1375at 1684.802 kb on + strand, within DvMF_1375at 1685.111 kb on + strandat 1685.167 kb on - strandat 1685.359 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
remove
1,682,795 - DvMF_1374 0.29 +0.4
1,682,838 + DvMF_1374 0.33 +0.5
1,682,957 + DvMF_1374 0.42 +0.6
1,682,965 - DvMF_1374 0.43 +0.4
1,682,993 - DvMF_1374 0.45 +0.7
1,683,059 + DvMF_1374 0.51 -0.0
1,683,139 + DvMF_1374 0.57 +0.6
1,683,147 - DvMF_1374 0.58 +0.7
1,683,471 + DvMF_1374 0.84 +0.4
1,683,545 + +0.5
1,683,845 - DvMF_1375 0.16 +0.8
1,683,950 - DvMF_1375 0.24 +1.0
1,683,957 + DvMF_1375 0.24 +1.5
1,684,064 - DvMF_1375 0.32 +1.4
1,684,102 - DvMF_1375 0.35 +1.1
1,684,194 - DvMF_1375 0.42 +1.2
1,684,231 + DvMF_1375 0.44 +0.6
1,684,239 - DvMF_1375 0.45 +0.9
1,684,267 - DvMF_1375 0.47 +0.9
1,684,391 + DvMF_1375 0.56 +0.8
1,684,576 - DvMF_1375 0.70 +1.1
1,684,605 - DvMF_1375 0.72 +1.1
1,684,630 - DvMF_1375 0.74 +0.9
1,684,765 - DvMF_1375 0.84 +0.9
1,684,802 + DvMF_1375 0.87 +0.5
1,685,111 + +0.7
1,685,167 - +0.8
1,685,359 - +0.6

Or see this region's nucleotide sequence