Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0314

Experiment: L-Methionine and L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0313 and DvMF_0314 are separated by 550 nucleotidesDvMF_0314 and DvMF_0315 overlap by 8 nucleotides DvMF_0313: DvMF_0313 - hypothetical protein (RefSeq), at 363,151 to 363,390 _0313 DvMF_0314: DvMF_0314 - protein of unknown function DUF485 (RefSeq), at 363,941 to 364,399 _0314 DvMF_0315: DvMF_0315 - SSS sodium solute transporter superfamily (RefSeq), at 364,392 to 365,951 _0315 Position (kb) 363 364 365Strain fitness (log2 ratio) -1 0 1at 363.125 kb on + strandat 363.305 kb on - strand, within DvMF_0313at 363.365 kb on - strand, within DvMF_0313at 363.537 kb on + strandat 363.853 kb on + strandat 363.923 kb on - strandat 363.933 kb on - strandat 363.974 kb on + strandat 364.026 kb on - strand, within DvMF_0314at 364.116 kb on + strand, within DvMF_0314at 364.174 kb on - strand, within DvMF_0314at 364.230 kb on - strand, within DvMF_0314at 364.270 kb on - strand, within DvMF_0314at 364.568 kb on - strand, within DvMF_0315at 364.569 kb on - strand, within DvMF_0315at 364.607 kb on - strand, within DvMF_0315at 364.633 kb on - strand, within DvMF_0315at 364.969 kb on - strand, within DvMF_0315at 365.228 kb on - strand, within DvMF_0315

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine and L-Threonine as nutrient
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363,125 + +0.8
363,305 - DvMF_0313 0.64 +0.2
363,365 - DvMF_0313 0.89 +0.1
363,537 + +0.6
363,853 + +1.0
363,923 - +0.1
363,933 - +0.2
363,974 + +0.1
364,026 - DvMF_0314 0.19 +0.7
364,116 + DvMF_0314 0.38 +0.2
364,174 - DvMF_0314 0.51 +0.7
364,230 - DvMF_0314 0.63 +0.8
364,270 - DvMF_0314 0.72 +1.2
364,568 - DvMF_0315 0.11 +0.2
364,569 - DvMF_0315 0.11 +0.6
364,607 - DvMF_0315 0.14 +1.0
364,633 - DvMF_0315 0.15 -0.0
364,969 - DvMF_0315 0.37 +0.2
365,228 - DvMF_0315 0.54 -0.0

Or see this region's nucleotide sequence