Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3966 and Dshi_3967 are separated by 188 nucleotides Dshi_3967 and Dshi_3968 are separated by 63 nucleotides Dshi_3968 and Dshi_3969 are separated by 160 nucleotides Dshi_3969 and Dshi_3970 are separated by 167 nucleotides Dshi_3970 and Dshi_3971 are separated by 124 nucleotides
Dshi_3966: Dshi_3966 - hypothetical protein (RefSeq), at 29,536 to 30,282
_3966
Dshi_3967: Dshi_3967 - transcriptional regulator, ArsR family (RefSeq), at 30,471 to 30,821
_3967
Dshi_3968: Dshi_3968 - cation efflux protein (RefSeq), at 30,885 to 31,736
_3968
Dshi_3969: Dshi_3969 - hypothetical protein (RefSeq), at 31,897 to 32,124
_3969
Dshi_3970: Dshi_3970 - transcriptional regulator, XRE family (RefSeq), at 32,292 to 32,549
_3970
Dshi_3971: Dshi_3971 - hypothetical protein (RefSeq), at 32,674 to 32,994
_3971
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 29.885 kb on - strand, within Dshi_3966 at 29.887 kb on + strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.921 kb on + strand, within Dshi_3966 at 29.929 kb on - strand, within Dshi_3966 at 29.938 kb on - strand, within Dshi_3966 at 29.942 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.977 kb on + strand, within Dshi_3966 at 29.993 kb on + strand, within Dshi_3966 at 30.000 kb on + strand, within Dshi_3966 at 30.000 kb on + strand, within Dshi_3966 at 30.046 kb on + strand, within Dshi_3966 at 30.046 kb on + strand, within Dshi_3966 at 30.054 kb on - strand, within Dshi_3966 at 30.054 kb on - strand, within Dshi_3966 at 30.057 kb on + strand, within Dshi_3966 at 30.092 kb on + strand, within Dshi_3966 at 30.100 kb on - strand, within Dshi_3966 at 30.105 kb on - strand, within Dshi_3966 at 30.120 kb on + strand, within Dshi_3966 at 30.149 kb on + strand, within Dshi_3966 at 30.156 kb on + strand, within Dshi_3966 at 30.185 kb on + strand, within Dshi_3966 at 30.208 kb on + strand at 30.214 kb on - strand at 30.216 kb on - strand at 30.216 kb on - strand at 30.218 kb on + strand at 30.223 kb on + strand at 30.226 kb on - strand at 30.255 kb on + strand at 30.268 kb on - strand at 30.268 kb on - strand at 30.270 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.295 kb on - strand at 30.295 kb on - strand at 30.295 kb on - strand at 30.308 kb on + strand at 30.313 kb on + strand at 30.316 kb on - strand at 30.318 kb on + strand at 30.318 kb on + strand at 30.320 kb on + strand at 30.321 kb on - strand at 30.326 kb on - strand at 30.332 kb on + strand at 30.332 kb on + strand at 30.332 kb on + strand at 30.332 kb on + strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.352 kb on + strand at 30.366 kb on + strand at 30.373 kb on + strand at 30.386 kb on + strand at 30.403 kb on - strand at 30.425 kb on - strand at 30.438 kb on - strand at 30.476 kb on + strand at 30.485 kb on - strand at 30.492 kb on + strand at 30.492 kb on + strand at 30.527 kb on + strand, within Dshi_3967 at 30.616 kb on + strand, within Dshi_3967 at 30.616 kb on + strand, within Dshi_3967 at 30.628 kb on - strand, within Dshi_3967 at 30.646 kb on - strand, within Dshi_3967 at 30.697 kb on - strand, within Dshi_3967 at 30.697 kb on - strand, within Dshi_3967 at 30.700 kb on + strand, within Dshi_3967 at 30.701 kb on - strand, within Dshi_3967 at 30.713 kb on - strand, within Dshi_3967 at 30.754 kb on - strand, within Dshi_3967 at 30.770 kb on + strand, within Dshi_3967 at 30.778 kb on - strand, within Dshi_3967 at 30.890 kb on - strand at 30.890 kb on - strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.956 kb on - strand at 30.956 kb on - strand at 30.956 kb on - strand at 30.995 kb on + strand, within Dshi_3968 at 30.997 kb on + strand, within Dshi_3968 at 30.997 kb on + strand, within Dshi_3968 at 31.005 kb on - strand, within Dshi_3968 at 31.008 kb on + strand, within Dshi_3968 at 31.016 kb on - strand, within Dshi_3968 at 31.016 kb on - strand, within Dshi_3968 at 31.018 kb on + strand, within Dshi_3968 at 31.033 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.051 kb on - strand, within Dshi_3968 at 31.132 kb on - strand, within Dshi_3968 at 31.133 kb on + strand, within Dshi_3968 at 31.135 kb on + strand, within Dshi_3968 at 31.143 kb on - strand, within Dshi_3968 at 31.221 kb on - strand, within Dshi_3968 at 31.401 kb on - strand, within Dshi_3968 at 31.407 kb on - strand, within Dshi_3968 at 31.420 kb on + strand, within Dshi_3968 at 31.433 kb on - strand, within Dshi_3968 at 31.434 kb on - strand, within Dshi_3968 at 31.458 kb on + strand, within Dshi_3968 at 31.523 kb on + strand, within Dshi_3968 at 31.531 kb on - strand, within Dshi_3968 at 31.531 kb on - strand, within Dshi_3968 at 31.538 kb on - strand, within Dshi_3968 at 31.622 kb on + strand, within Dshi_3968 at 31.622 kb on + strand, within Dshi_3968 at 31.636 kb on + strand, within Dshi_3968 at 31.644 kb on - strand, within Dshi_3968 at 31.644 kb on - strand, within Dshi_3968 at 31.721 kb on + strand at 31.721 kb on + strand at 31.745 kb on - strand at 31.888 kb on - strand at 31.921 kb on - strand, within Dshi_3969 at 31.992 kb on + strand, within Dshi_3969 at 31.997 kb on + strand, within Dshi_3969 at 32.000 kb on - strand, within Dshi_3969 at 32.015 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.033 kb on - strand, within Dshi_3969 at 32.068 kb on - strand, within Dshi_3969 at 32.070 kb on + strand, within Dshi_3969 at 32.078 kb on - strand, within Dshi_3969 at 32.084 kb on + strand, within Dshi_3969 at 32.089 kb on + strand, within Dshi_3969 at 32.102 kb on + strand at 32.108 kb on + strand at 32.116 kb on - strand at 32.135 kb on + strand at 32.162 kb on - strand at 32.185 kb on - strand at 32.192 kb on + strand at 32.242 kb on + strand at 32.242 kb on + strand at 32.261 kb on - strand at 32.310 kb on + strand at 32.318 kb on - strand, within Dshi_3970 at 32.318 kb on - strand, within Dshi_3970 at 32.318 kb on - strand, within Dshi_3970 at 32.318 kb on - strand, within Dshi_3970 at 32.364 kb on - strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.382 kb on - strand, within Dshi_3970 at 32.382 kb on - strand, within Dshi_3970 at 32.433 kb on - strand, within Dshi_3970 at 32.469 kb on + strand, within Dshi_3970 at 32.469 kb on + strand, within Dshi_3970 at 32.476 kb on - strand, within Dshi_3970 at 32.486 kb on + strand, within Dshi_3970 at 32.489 kb on - strand, within Dshi_3970 at 32.489 kb on - strand, within Dshi_3970 at 32.642 kb on + strand at 32.644 kb on + strand at 32.652 kb on - strand at 32.652 kb on - strand at 32.652 kb on - strand at 32.664 kb on - strand at 32.686 kb on - strand at 32.730 kb on + strand, within Dshi_3971 at 32.730 kb on + strand, within Dshi_3971
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 29,885 - Dshi_3966 0.47 +0.6 29,887 + Dshi_3966 0.47 +0.9 29,920 - Dshi_3966 0.51 +0.4 29,920 - Dshi_3966 0.51 -1.1 29,920 - Dshi_3966 0.51 +0.0 29,920 - Dshi_3966 0.51 +0.5 29,920 - Dshi_3966 0.51 +0.0 29,920 - Dshi_3966 0.51 -0.3 29,920 - Dshi_3966 0.51 -0.7 29,921 + Dshi_3966 0.52 +0.5 29,929 - Dshi_3966 0.53 -2.6 29,938 - Dshi_3966 0.54 +0.0 29,942 + Dshi_3966 0.54 -0.3 29,952 + Dshi_3966 0.56 +0.2 29,952 + Dshi_3966 0.56 -0.1 29,952 + Dshi_3966 0.56 -1.3 29,952 + Dshi_3966 0.56 +0.0 29,960 - Dshi_3966 0.57 +1.7 29,960 - Dshi_3966 0.57 -0.1 29,960 - Dshi_3966 0.57 +0.6 29,960 - Dshi_3966 0.57 -0.3 29,960 - Dshi_3966 0.57 -0.6 29,960 - Dshi_3966 0.57 -0.1 29,960 - Dshi_3966 0.57 -1.0 29,960 - Dshi_3966 0.57 -0.7 29,960 - Dshi_3966 0.57 +0.2 29,960 - Dshi_3966 0.57 -0.2 29,960 - Dshi_3966 0.57 -0.5 29,960 - Dshi_3966 0.57 +1.5 29,960 - Dshi_3966 0.57 -0.6 29,962 + Dshi_3966 0.57 +0.1 29,962 + Dshi_3966 0.57 -0.8 29,962 + Dshi_3966 0.57 -0.9 29,962 + Dshi_3966 0.57 +0.5 29,962 + Dshi_3966 0.57 -0.0 29,962 + Dshi_3966 0.57 +0.4 29,962 + Dshi_3966 0.57 +0.0 29,962 + Dshi_3966 0.57 -0.4 29,962 + Dshi_3966 0.57 +0.5 29,962 + Dshi_3966 0.57 +0.7 29,970 - Dshi_3966 0.58 -0.9 29,970 - Dshi_3966 0.58 +0.7 29,970 - Dshi_3966 0.58 +0.2 29,970 - Dshi_3966 0.58 +0.2 29,970 - Dshi_3966 0.58 -0.4 29,970 - Dshi_3966 0.58 -0.4 29,970 - Dshi_3966 0.58 +0.0 29,970 - Dshi_3966 0.58 -0.2 29,977 + Dshi_3966 0.59 +0.3 29,993 + Dshi_3966 0.61 +0.2 30,000 + Dshi_3966 0.62 -0.1 30,000 + Dshi_3966 0.62 +0.9 30,046 + Dshi_3966 0.68 -0.7 30,046 + Dshi_3966 0.68 +0.8 30,054 - Dshi_3966 0.69 +0.3 30,054 - Dshi_3966 0.69 -0.1 30,057 + Dshi_3966 0.70 +0.4 30,092 + Dshi_3966 0.74 -0.5 30,100 - Dshi_3966 0.76 -0.3 30,105 - Dshi_3966 0.76 -0.4 30,120 + Dshi_3966 0.78 -0.3 30,149 + Dshi_3966 0.82 -0.0 30,156 + Dshi_3966 0.83 +0.1 30,185 + Dshi_3966 0.87 +0.7 30,208 + -0.9 30,214 - +0.4 30,216 - -0.9 30,216 - -0.3 30,218 + +0.1 30,223 + +0.1 30,226 - +1.1 30,255 + -0.2 30,268 - -0.6 30,268 - +0.7 30,270 + +0.1 30,287 + -1.1 30,287 + -1.1 30,287 + +1.1 30,287 + -1.3 30,287 + -0.5 30,287 + -0.4 30,287 + -0.1 30,287 + -0.5 30,287 + -0.9 30,295 - -0.5 30,295 - +0.4 30,295 - -0.3 30,308 + +0.5 30,313 + +0.7 30,316 - -0.5 30,318 + +0.1 30,318 + +0.2 30,320 + -0.9 30,321 - +0.6 30,326 - -0.1 30,332 + -1.2 30,332 + -0.1 30,332 + -0.3 30,332 + +0.2 30,335 - -0.2 30,335 - -0.2 30,335 - -0.1 30,335 - +0.1 30,352 + -1.1 30,366 + +0.4 30,373 + -0.5 30,386 + -0.9 30,403 - -0.1 30,425 - +0.5 30,438 - +0.6 30,476 + +0.4 30,485 - +0.1 30,492 + +0.0 30,492 + -0.1 30,527 + Dshi_3967 0.16 -0.0 30,616 + Dshi_3967 0.41 -0.2 30,616 + Dshi_3967 0.41 +0.7 30,628 - Dshi_3967 0.45 +0.0 30,646 - Dshi_3967 0.50 -0.8 30,697 - Dshi_3967 0.64 +0.2 30,697 - Dshi_3967 0.64 -0.2 30,700 + Dshi_3967 0.65 +0.6 30,701 - Dshi_3967 0.66 +0.9 30,713 - Dshi_3967 0.69 +1.0 30,754 - Dshi_3967 0.81 +0.2 30,770 + Dshi_3967 0.85 +0.3 30,778 - Dshi_3967 0.87 -1.0 30,890 - -0.4 30,890 - -0.5 30,948 + -0.4 30,948 + +0.3 30,948 + +0.7 30,948 + -0.7 30,948 + +0.3 30,948 + -0.8 30,948 + +0.2 30,956 - -0.2 30,956 - -0.4 30,956 - -0.0 30,995 + Dshi_3968 0.13 +0.3 30,997 + Dshi_3968 0.13 -0.1 30,997 + Dshi_3968 0.13 +0.5 31,005 - Dshi_3968 0.14 -0.1 31,008 + Dshi_3968 0.14 -0.5 31,016 - Dshi_3968 0.15 -0.7 31,016 - Dshi_3968 0.15 +0.1 31,018 + Dshi_3968 0.16 +0.4 31,033 + Dshi_3968 0.17 +0.4 31,043 + Dshi_3968 0.19 -0.8 31,043 + Dshi_3968 0.19 +1.2 31,043 + Dshi_3968 0.19 +1.7 31,043 + Dshi_3968 0.19 +0.9 31,051 - Dshi_3968 0.19 -1.9 31,132 - Dshi_3968 0.29 +0.0 31,133 + Dshi_3968 0.29 -2.0 31,135 + Dshi_3968 0.29 -0.5 31,143 - Dshi_3968 0.30 +0.7 31,221 - Dshi_3968 0.39 +1.0 31,401 - Dshi_3968 0.61 -0.9 31,407 - Dshi_3968 0.61 -0.2 31,420 + Dshi_3968 0.63 +0.1 31,433 - Dshi_3968 0.64 +0.6 31,434 - Dshi_3968 0.64 +0.5 31,458 + Dshi_3968 0.67 -0.4 31,523 + Dshi_3968 0.75 -0.5 31,531 - Dshi_3968 0.76 +0.6 31,531 - Dshi_3968 0.76 -0.0 31,538 - Dshi_3968 0.77 -1.3 31,622 + Dshi_3968 0.87 +0.3 31,622 + Dshi_3968 0.87 +0.6 31,636 + Dshi_3968 0.88 +0.0 31,644 - Dshi_3968 0.89 -0.1 31,644 - Dshi_3968 0.89 -0.9 31,721 + -0.0 31,721 + -0.6 31,745 - +0.6 31,888 - +0.0 31,921 - Dshi_3969 0.11 +0.9 31,992 + Dshi_3969 0.42 -0.6 31,997 + Dshi_3969 0.44 -0.1 32,000 - Dshi_3969 0.45 -0.3 32,015 - Dshi_3969 0.52 -0.3 32,017 - Dshi_3969 0.53 +2.9 32,017 - Dshi_3969 0.53 -0.5 32,017 - Dshi_3969 0.53 +0.4 32,017 - Dshi_3969 0.53 +0.4 32,017 - Dshi_3969 0.53 -0.6 32,017 - Dshi_3969 0.53 +0.7 32,033 - Dshi_3969 0.60 -0.0 32,068 - Dshi_3969 0.75 +0.9 32,070 + Dshi_3969 0.76 -0.2 32,078 - Dshi_3969 0.79 -0.7 32,084 + Dshi_3969 0.82 -0.2 32,089 + Dshi_3969 0.84 +0.0 32,102 + -1.5 32,108 + -0.7 32,116 - -0.3 32,135 + +0.1 32,162 - -0.7 32,185 - -0.2 32,192 + -0.5 32,242 + -0.8 32,242 + +0.5 32,261 - -0.0 32,310 + -0.2 32,318 - Dshi_3970 0.10 -0.6 32,318 - Dshi_3970 0.10 -0.1 32,318 - Dshi_3970 0.10 -0.5 32,318 - Dshi_3970 0.10 -0.4 32,364 - Dshi_3970 0.28 -0.3 32,367 + Dshi_3970 0.29 -1.4 32,367 + Dshi_3970 0.29 -0.4 32,367 + Dshi_3970 0.29 -1.6 32,367 + Dshi_3970 0.29 +1.1 32,367 + Dshi_3970 0.29 -1.1 32,367 + Dshi_3970 0.29 -0.5 32,367 + Dshi_3970 0.29 +0.6 32,375 - Dshi_3970 0.32 -0.0 32,375 - Dshi_3970 0.32 -0.5 32,375 - Dshi_3970 0.32 +0.1 32,375 - Dshi_3970 0.32 -0.2 32,375 - Dshi_3970 0.32 +0.9 32,375 - Dshi_3970 0.32 +0.1 32,375 - Dshi_3970 0.32 -0.1 32,382 - Dshi_3970 0.35 +0.6 32,382 - Dshi_3970 0.35 +0.1 32,433 - Dshi_3970 0.55 +0.9 32,469 + Dshi_3970 0.69 -1.3 32,469 + Dshi_3970 0.69 -0.7 32,476 - Dshi_3970 0.71 -0.1 32,486 + Dshi_3970 0.75 -0.1 32,489 - Dshi_3970 0.76 -1.6 32,489 - Dshi_3970 0.76 -1.6 32,642 + -1.1 32,644 + +0.3 32,652 - -0.4 32,652 - +0.1 32,652 - +0.1 32,664 - -0.7 32,686 - +0.6 32,730 + Dshi_3971 0.17 -0.5 32,730 + Dshi_3971 0.17 -1.9
Or see this region's nucleotide sequence