Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3642

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3641 and Dshi_3642 overlap by 4 nucleotidesDshi_3642 and Dshi_3643 overlap by 11 nucleotides Dshi_3641: Dshi_3641 - CagE TrbE VirB component of type IV transporter system (RefSeq), at 40,348 to 42,723 _3641 Dshi_3642: Dshi_3642 - hypothetical protein (RefSeq), at 42,720 to 42,887 _3642 Dshi_3643: Dshi_3643 - Lytic transglycosylase catalytic (RefSeq), at 42,877 to 44,031 _3643 Position (kb) 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1at 41.858 kb on - strand, within Dshi_3641at 41.881 kb on - strand, within Dshi_3641at 41.926 kb on + strand, within Dshi_3641at 41.928 kb on + strand, within Dshi_3641at 41.928 kb on + strand, within Dshi_3641at 41.936 kb on - strand, within Dshi_3641at 41.936 kb on - strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.955 kb on - strand, within Dshi_3641at 41.959 kb on + strand, within Dshi_3641at 41.964 kb on + strand, within Dshi_3641at 41.967 kb on - strand, within Dshi_3641at 42.014 kb on - strand, within Dshi_3641at 42.019 kb on - strand, within Dshi_3641at 42.019 kb on - strand, within Dshi_3641at 42.229 kb on + strand, within Dshi_3641at 42.574 kb on - strandat 42.599 kb on - strandat 42.749 kb on + strand, within Dshi_3642at 42.764 kb on - strand, within Dshi_3642at 42.784 kb on - strand, within Dshi_3642at 42.830 kb on - strand, within Dshi_3642at 42.889 kb on - strandat 42.889 kb on - strandat 42.901 kb on - strandat 42.906 kb on - strandat 42.911 kb on + strandat 42.940 kb on + strandat 42.941 kb on - strandat 42.942 kb on - strandat 43.000 kb on + strand, within Dshi_3643at 43.032 kb on - strand, within Dshi_3643at 43.087 kb on - strand, within Dshi_3643at 43.099 kb on + strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.118 kb on - strand, within Dshi_3643at 43.125 kb on - strand, within Dshi_3643at 43.189 kb on + strand, within Dshi_3643at 43.228 kb on + strand, within Dshi_3643at 43.326 kb on + strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.356 kb on - strand, within Dshi_3643at 43.412 kb on + strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.471 kb on - strand, within Dshi_3643at 43.481 kb on + strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.535 kb on - strand, within Dshi_3643at 43.575 kb on - strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.639 kb on + strand, within Dshi_3643at 43.644 kb on + strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.646 kb on - strand, within Dshi_3643at 43.648 kb on + strand, within Dshi_3643at 43.657 kb on - strand, within Dshi_3643at 43.672 kb on - strand, within Dshi_3643at 43.688 kb on + strand, within Dshi_3643at 43.728 kb on - strand, within Dshi_3643at 43.755 kb on - strand, within Dshi_3643at 43.814 kb on + strand, within Dshi_3643at 43.817 kb on - strand, within Dshi_3643at 43.843 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.877 kb on + strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.885 kb on - strand, within Dshi_3643

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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41,858 - Dshi_3641 0.64 -0.1
41,881 - Dshi_3641 0.65 -0.5
41,926 + Dshi_3641 0.66 -0.1
41,928 + Dshi_3641 0.66 -0.5
41,928 + Dshi_3641 0.66 +0.2
41,936 - Dshi_3641 0.67 -0.2
41,936 - Dshi_3641 0.67 -0.3
41,954 + Dshi_3641 0.68 +0.3
41,954 + Dshi_3641 0.68 -0.2
41,954 + Dshi_3641 0.68 -0.7
41,955 - Dshi_3641 0.68 -0.1
41,959 + Dshi_3641 0.68 +0.1
41,964 + Dshi_3641 0.68 +0.8
41,967 - Dshi_3641 0.68 -0.2
42,014 - Dshi_3641 0.70 -0.1
42,019 - Dshi_3641 0.70 -2.9
42,019 - Dshi_3641 0.70 +0.1
42,229 + Dshi_3641 0.79 -0.5
42,574 - -0.7
42,599 - -1.4
42,749 + Dshi_3642 0.17 +0.5
42,764 - Dshi_3642 0.26 +0.9
42,784 - Dshi_3642 0.38 +0.7
42,830 - Dshi_3642 0.65 -0.3
42,889 - +0.0
42,889 - -0.2
42,901 - -0.7
42,906 - -0.4
42,911 + +0.6
42,940 + -1.5
42,941 - -0.5
42,942 - -0.6
43,000 + Dshi_3643 0.11 +1.3
43,032 - Dshi_3643 0.13 -0.3
43,087 - Dshi_3643 0.18 -0.5
43,099 + Dshi_3643 0.19 -0.7
43,107 - Dshi_3643 0.20 +0.0
43,107 - Dshi_3643 0.20 +0.7
43,107 - Dshi_3643 0.20 +0.6
43,118 - Dshi_3643 0.21 -0.1
43,125 - Dshi_3643 0.21 +1.4
43,189 + Dshi_3643 0.27 +0.7
43,228 + Dshi_3643 0.30 +0.3
43,326 + Dshi_3643 0.39 +0.1
43,331 - Dshi_3643 0.39 -1.1
43,331 - Dshi_3643 0.39 -0.2
43,341 - Dshi_3643 0.40 -0.9
43,341 - Dshi_3643 0.40 -0.5
43,356 - Dshi_3643 0.41 -0.8
43,412 + Dshi_3643 0.46 -1.4
43,420 - Dshi_3643 0.47 +0.1
43,420 - Dshi_3643 0.47 +0.1
43,436 - Dshi_3643 0.48 -1.2
43,436 - Dshi_3643 0.48 -0.6
43,436 - Dshi_3643 0.48 -1.0
43,471 - Dshi_3643 0.51 -0.3
43,481 + Dshi_3643 0.52 +0.0
43,489 - Dshi_3643 0.53 -0.5
43,489 - Dshi_3643 0.53 -0.3
43,535 - Dshi_3643 0.57 +0.9
43,575 - Dshi_3643 0.60 +0.7
43,627 + Dshi_3643 0.65 +1.4
43,627 + Dshi_3643 0.65 +0.2
43,639 + Dshi_3643 0.66 -0.2
43,644 + Dshi_3643 0.66 -1.2
43,645 - Dshi_3643 0.66 +0.1
43,645 - Dshi_3643 0.66 +0.7
43,645 - Dshi_3643 0.66 -0.5
43,646 - Dshi_3643 0.67 -1.4
43,648 + Dshi_3643 0.67 -0.5
43,657 - Dshi_3643 0.68 -0.2
43,672 - Dshi_3643 0.69 +0.1
43,688 + Dshi_3643 0.70 +0.5
43,728 - Dshi_3643 0.74 -1.7
43,755 - Dshi_3643 0.76 -0.0
43,814 + Dshi_3643 0.81 -0.6
43,817 - Dshi_3643 0.81 -0.4
43,843 + Dshi_3643 0.84 -0.4
43,876 + Dshi_3643 0.86 -0.4
43,876 + Dshi_3643 0.86 +0.4
43,877 + Dshi_3643 0.87 -1.3
43,884 - Dshi_3643 0.87 +0.7
43,884 - Dshi_3643 0.87 -0.6
43,885 - Dshi_3643 0.87 +0.3

Or see this region's nucleotide sequence