Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3354

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.004 mg/ml
3,524,863	+		Dshi_3353	0.60	+0.1
3,524,890	-		Dshi_3353	0.61	-0.6
3,524,903	-		Dshi_3353	0.62	+0.0
3,524,928	+		Dshi_3353	0.63	-2.6
3,524,935	+		Dshi_3353	0.63	+0.6
3,524,957	-		Dshi_3353	0.64	-0.3
3,524,973	+		Dshi_3353	0.64	+0.9
3,525,160	+		Dshi_3353	0.72	-0.2
3,525,218	-		Dshi_3353	0.75	+0.5
3,525,228	-		Dshi_3353	0.75	-0.3
3,525,230	+		Dshi_3353	0.75	-0.2
3,525,251	+		Dshi_3353	0.76	-0.2
3,525,275	-		Dshi_3353	0.77	+0.2
3,525,282	+		Dshi_3353	0.77	-0.4
3,525,338	-		Dshi_3353	0.80	-0.1
3,525,340	-		Dshi_3353	0.80	-0.3
3,525,393	+		Dshi_3353	0.82	-1.2
3,525,393	+		Dshi_3353	0.82	-2.0
3,525,393	+		Dshi_3353	0.82	+0.5
3,525,401	-		Dshi_3353	0.82	-0.1
3,525,516	-		Dshi_3353	0.87	-0.2
3,525,543	+		Dshi_3353	0.88	-1.7
3,525,565	-		Dshi_3353	0.89	+0.3
3,525,580	+		Dshi_3353	0.90	-0.5
3,525,582	-		Dshi_3353	0.90	-0.3
3,525,588	-				-0.3
3,525,598	-				+0.3
3,525,622	+				-1.4
3,525,630	-				+0.1
3,525,656	-				+0.4
3,525,660	-				+0.7
3,525,664	+				-0.4
3,525,664	+				+0.0
3,525,732	+				-0.3
3,525,747	+				-0.5
3,525,750	-				+1.6
3,525,775	-				-1.0
3,525,849	+				-0.3
3,525,862	+				-0.9
3,525,863	+				-0.9
3,525,945	-		Dshi_3354	0.18	-0.8
3,526,023	+		Dshi_3354	0.30	+3.3
3,526,058	+		Dshi_3354	0.35	+0.7
3,526,058	+		Dshi_3354	0.35	-0.8
3,526,058	+		Dshi_3354	0.35	+0.6
3,526,073	+		Dshi_3354	0.38	+0.7
3,526,184	+		Dshi_3354	0.54	+0.1
3,526,190	+		Dshi_3354	0.55	+0.5
3,526,350	+		Dshi_3354	0.80	+0.2
3,526,364	+		Dshi_3354	0.82	-0.4
3,526,374	+		Dshi_3354	0.83	+0.6
3,526,374	+		Dshi_3354	0.83	-0.1
3,526,382	-		Dshi_3354	0.85	+0.5
3,526,424	+				-0.7
3,526,431	-				-0.2
3,526,480	-				+0.9
3,526,514	-				-0.2
3,526,514	-				+0.6
3,526,516	-				+0.1
3,526,608	+				+0.2
3,526,645	-				-1.9