Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1760 and Dshi_1761 overlap by 1 nucleotides Dshi_1761 and Dshi_1762 are separated by 58 nucleotides Dshi_1762 and Dshi_1763 are separated by 156 nucleotides
Dshi_1760: Dshi_1760 - glutamate racemase (RefSeq), at 1,823,438 to 1,824,259
_1760
Dshi_1761: Dshi_1761 - phospholipid/glycerol acyltransferase (RefSeq), at 1,824,259 to 1,825,137
_1761
Dshi_1762: Dshi_1762 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 1,825,196 to 1,828,603
_1762
Dshi_1763: Dshi_1763 - transcriptional regulator, LysR family (RefSeq), at 1,828,760 to 1,829,662
_1763
Position (kb)
1825
1826
1827
1828
1829 Strain fitness (log2 ratio)
-2
-1
0
1 at 1824.543 kb on - strand, within Dshi_1761 at 1824.637 kb on - strand, within Dshi_1761 at 1824.743 kb on - strand, within Dshi_1761 at 1824.797 kb on + strand, within Dshi_1761 at 1824.833 kb on + strand, within Dshi_1761 at 1824.843 kb on + strand, within Dshi_1761 at 1824.871 kb on - strand, within Dshi_1761 at 1824.871 kb on - strand, within Dshi_1761 at 1824.920 kb on - strand, within Dshi_1761 at 1824.933 kb on + strand, within Dshi_1761 at 1824.941 kb on - strand, within Dshi_1761 at 1824.941 kb on - strand, within Dshi_1761 at 1825.172 kb on - strand at 1825.172 kb on - strand at 1825.173 kb on - strand at 1825.247 kb on - strand at 1825.333 kb on - strand at 1825.379 kb on - strand at 1825.382 kb on + strand at 1825.483 kb on - strand at 1825.502 kb on - strand at 1825.722 kb on - strand, within Dshi_1762 at 1825.778 kb on - strand, within Dshi_1762 at 1825.787 kb on - strand, within Dshi_1762 at 1825.792 kb on - strand, within Dshi_1762 at 1825.874 kb on + strand, within Dshi_1762 at 1825.924 kb on + strand, within Dshi_1762 at 1826.196 kb on + strand, within Dshi_1762 at 1826.341 kb on - strand, within Dshi_1762 at 1826.366 kb on + strand, within Dshi_1762 at 1826.433 kb on + strand, within Dshi_1762 at 1826.440 kb on - strand, within Dshi_1762 at 1826.719 kb on + strand, within Dshi_1762 at 1826.806 kb on - strand, within Dshi_1762 at 1826.806 kb on - strand, within Dshi_1762 at 1826.890 kb on - strand, within Dshi_1762 at 1826.953 kb on + strand, within Dshi_1762 at 1826.961 kb on - strand, within Dshi_1762 at 1826.969 kb on - strand, within Dshi_1762 at 1826.978 kb on + strand, within Dshi_1762 at 1827.065 kb on + strand, within Dshi_1762 at 1827.080 kb on + strand, within Dshi_1762 at 1827.267 kb on - strand, within Dshi_1762 at 1827.328 kb on - strand, within Dshi_1762 at 1827.395 kb on + strand, within Dshi_1762 at 1827.516 kb on + strand, within Dshi_1762 at 1827.516 kb on + strand, within Dshi_1762 at 1827.659 kb on - strand, within Dshi_1762 at 1827.749 kb on + strand, within Dshi_1762 at 1827.853 kb on - strand, within Dshi_1762 at 1827.857 kb on + strand, within Dshi_1762 at 1828.046 kb on + strand, within Dshi_1762 at 1828.243 kb on + strand, within Dshi_1762 at 1828.404 kb on - strand at 1828.567 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 1,824,543 - Dshi_1761 0.32 -1.2 1,824,637 - Dshi_1761 0.43 -0.6 1,824,743 - Dshi_1761 0.55 +0.4 1,824,797 + Dshi_1761 0.61 -0.4 1,824,833 + Dshi_1761 0.65 -0.2 1,824,843 + Dshi_1761 0.66 -0.4 1,824,871 - Dshi_1761 0.70 -0.4 1,824,871 - Dshi_1761 0.70 -0.5 1,824,920 - Dshi_1761 0.75 -1.4 1,824,933 + Dshi_1761 0.77 +0.4 1,824,941 - Dshi_1761 0.78 -0.4 1,824,941 - Dshi_1761 0.78 +0.9 1,825,172 - -0.7 1,825,172 - -1.7 1,825,173 - -0.4 1,825,247 - -0.0 1,825,333 - -0.6 1,825,379 - -0.4 1,825,382 + -0.3 1,825,483 - -2.3 1,825,502 - -0.8 1,825,722 - Dshi_1762 0.15 +0.1 1,825,778 - Dshi_1762 0.17 +0.1 1,825,787 - Dshi_1762 0.17 -1.1 1,825,792 - Dshi_1762 0.17 +0.3 1,825,874 + Dshi_1762 0.20 -1.4 1,825,924 + Dshi_1762 0.21 -2.4 1,826,196 + Dshi_1762 0.29 -2.1 1,826,341 - Dshi_1762 0.34 -0.4 1,826,366 + Dshi_1762 0.34 -1.2 1,826,433 + Dshi_1762 0.36 -1.4 1,826,440 - Dshi_1762 0.37 +0.0 1,826,719 + Dshi_1762 0.45 +0.0 1,826,806 - Dshi_1762 0.47 +1.0 1,826,806 - Dshi_1762 0.47 +1.1 1,826,890 - Dshi_1762 0.50 -0.1 1,826,953 + Dshi_1762 0.52 -0.3 1,826,961 - Dshi_1762 0.52 -0.2 1,826,969 - Dshi_1762 0.52 +0.0 1,826,978 + Dshi_1762 0.52 -0.3 1,827,065 + Dshi_1762 0.55 -1.4 1,827,080 + Dshi_1762 0.55 -0.5 1,827,267 - Dshi_1762 0.61 +0.0 1,827,328 - Dshi_1762 0.63 -1.4 1,827,395 + Dshi_1762 0.65 +1.0 1,827,516 + Dshi_1762 0.68 -1.0 1,827,516 + Dshi_1762 0.68 +0.5 1,827,659 - Dshi_1762 0.72 -1.0 1,827,749 + Dshi_1762 0.75 +0.0 1,827,853 - Dshi_1762 0.78 -1.2 1,827,857 + Dshi_1762 0.78 -0.2 1,828,046 + Dshi_1762 0.84 -0.8 1,828,243 + Dshi_1762 0.89 -1.2 1,828,404 - -1.4 1,828,567 - -0.5
Or see this region's nucleotide sequence