Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0806 and Dshi_0807 are separated by 6 nucleotides Dshi_0807 and Dshi_0808 are separated by 151 nucleotides
Dshi_0806: Dshi_0806 - hypothetical protein (RefSeq), at 814,089 to 815,120
_0806
Dshi_0807: Dshi_0807 - hypothetical protein (RefSeq), at 815,127 to 816,155
_0807
Dshi_0808: Dshi_0808 - MltA-interacting MipA family protein (RefSeq), at 816,307 to 817,050
_0808
Position (kb) 815
816
817 Strain fitness (log2 ratio) -1
0
1
2 at 814.139 kb on + strand at 814.208 kb on + strand, within Dshi_0806 at 814.218 kb on + strand, within Dshi_0806 at 814.237 kb on - strand, within Dshi_0806 at 814.241 kb on + strand, within Dshi_0806 at 814.317 kb on + strand, within Dshi_0806 at 814.396 kb on + strand, within Dshi_0806 at 814.582 kb on - strand, within Dshi_0806 at 814.612 kb on + strand, within Dshi_0806 at 814.622 kb on - strand, within Dshi_0806 at 814.630 kb on - strand, within Dshi_0806 at 814.709 kb on + strand, within Dshi_0806 at 814.917 kb on + strand, within Dshi_0806 at 814.920 kb on - strand, within Dshi_0806 at 814.981 kb on - strand, within Dshi_0806 at 815.027 kb on + strand at 815.151 kb on - strand at 815.194 kb on + strand at 815.306 kb on - strand, within Dshi_0807 at 815.333 kb on + strand, within Dshi_0807 at 815.388 kb on + strand, within Dshi_0807 at 815.634 kb on - strand, within Dshi_0807 at 815.710 kb on + strand, within Dshi_0807 at 815.938 kb on - strand, within Dshi_0807 at 816.034 kb on - strand, within Dshi_0807 at 816.119 kb on - strand at 816.141 kb on - strand at 816.172 kb on + strand at 816.198 kb on - strand at 816.209 kb on + strand at 816.213 kb on - strand at 816.272 kb on + strand at 816.407 kb on + strand, within Dshi_0808 at 816.415 kb on - strand, within Dshi_0808 at 816.424 kb on + strand, within Dshi_0808 at 816.432 kb on - strand, within Dshi_0808 at 816.432 kb on - strand, within Dshi_0808 at 816.451 kb on - strand, within Dshi_0808 at 816.588 kb on + strand, within Dshi_0808 at 816.753 kb on + strand, within Dshi_0808 at 816.825 kb on - strand, within Dshi_0808 at 816.854 kb on - strand, within Dshi_0808 at 816.923 kb on + strand, within Dshi_0808 at 816.931 kb on - strand, within Dshi_0808 at 816.977 kb on + strand at 816.987 kb on - strand at 816.987 kb on - strand at 816.991 kb on - strand at 817.011 kb on + strand at 817.011 kb on + strand at 817.011 kb on + strand at 817.014 kb on - strand at 817.019 kb on - strand at 817.031 kb on - strand at 817.114 kb on + strand at 817.114 kb on - strand at 817.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 814,139 + -0.1 814,208 + Dshi_0806 0.12 -0.6 814,218 + Dshi_0806 0.12 -0.3 814,237 - Dshi_0806 0.14 +0.4 814,241 + Dshi_0806 0.15 +1.4 814,317 + Dshi_0806 0.22 +0.1 814,396 + Dshi_0806 0.30 -0.9 814,582 - Dshi_0806 0.48 -0.4 814,612 + Dshi_0806 0.51 +0.1 814,622 - Dshi_0806 0.52 +0.2 814,630 - Dshi_0806 0.52 -0.3 814,709 + Dshi_0806 0.60 +2.1 814,917 + Dshi_0806 0.80 +0.1 814,920 - Dshi_0806 0.81 -0.1 814,981 - Dshi_0806 0.86 +0.4 815,027 + +0.8 815,151 - -0.0 815,194 + +0.1 815,306 - Dshi_0807 0.17 -0.7 815,333 + Dshi_0807 0.20 -0.1 815,388 + Dshi_0807 0.25 -0.9 815,634 - Dshi_0807 0.49 -0.3 815,710 + Dshi_0807 0.57 -1.1 815,938 - Dshi_0807 0.79 -0.1 816,034 - Dshi_0807 0.88 +0.4 816,119 - +0.5 816,141 - -0.1 816,172 + -0.3 816,198 - +0.7 816,209 + +0.4 816,213 - +1.7 816,272 + +0.2 816,407 + Dshi_0808 0.13 +0.4 816,415 - Dshi_0808 0.15 -1.0 816,424 + Dshi_0808 0.16 -1.3 816,432 - Dshi_0808 0.17 -1.0 816,432 - Dshi_0808 0.17 +0.5 816,451 - Dshi_0808 0.19 -0.3 816,588 + Dshi_0808 0.38 +1.1 816,753 + Dshi_0808 0.60 -0.0 816,825 - Dshi_0808 0.70 -0.2 816,854 - Dshi_0808 0.74 -0.0 816,923 + Dshi_0808 0.83 -0.1 816,931 - Dshi_0808 0.84 +0.1 816,977 + +0.2 816,987 - +0.7 816,987 - -0.8 816,991 - -0.1 817,011 + +0.5 817,011 + +0.3 817,011 + -0.1 817,014 - -0.3 817,019 - -0.2 817,031 - +0.2 817,114 + -0.9 817,114 - -0.0 817,122 - -0.7
Or see this region's nucleotide sequence