Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0711 and Dshi_0712 are separated by 90 nucleotides Dshi_0712 and Dshi_0713 are separated by 105 nucleotides Dshi_0713 and Dshi_0714 overlap by 20 nucleotides
Dshi_0710: Dshi_0710 - hypothetical protein (RefSeq), at 718,730 to 719,377
_0710
Dshi_0711: Dshi_0711 - transcriptional regulator, LysR family (RefSeq), at 719,323 to 720,249
_0711
Dshi_0712: Dshi_0712 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 720,340 to 720,966
_0712
Dshi_0713: Dshi_0713 - Poly(3-hydroxybutyrate) depolymerase-like protein (RefSeq), at 721,072 to 721,935
_0713
Dshi_0714: Dshi_0714 - protein of unknown function DUF6 transmembrane (RefSeq), at 721,916 to 722,884
_0714
Position (kb) 720
721 Strain fitness (log2 ratio) -2
-1
0
1 at 719.396 kb on + strand at 719.396 kb on + strand at 719.422 kb on + strand, within Dshi_0711 at 719.638 kb on - strand, within Dshi_0711 at 719.681 kb on - strand, within Dshi_0711 at 719.787 kb on - strand, within Dshi_0711 at 719.787 kb on - strand, within Dshi_0711 at 719.880 kb on - strand, within Dshi_0711 at 719.936 kb on - strand, within Dshi_0711 at 719.938 kb on + strand, within Dshi_0711 at 719.982 kb on + strand, within Dshi_0711 at 720.083 kb on + strand, within Dshi_0711 at 720.091 kb on - strand, within Dshi_0711 at 720.134 kb on + strand, within Dshi_0711 at 720.168 kb on + strand at 720.330 kb on + strand at 720.330 kb on + strand at 720.338 kb on - strand at 720.353 kb on + strand at 720.355 kb on - strand at 720.368 kb on + strand at 720.455 kb on + strand, within Dshi_0712 at 720.474 kb on + strand, within Dshi_0712 at 720.608 kb on + strand, within Dshi_0712 at 720.648 kb on - strand, within Dshi_0712 at 720.680 kb on + strand, within Dshi_0712 at 720.685 kb on + strand, within Dshi_0712 at 720.705 kb on + strand, within Dshi_0712 at 720.840 kb on - strand, within Dshi_0712 at 720.865 kb on + strand, within Dshi_0712 at 720.892 kb on + strand, within Dshi_0712 at 720.906 kb on - strand at 720.964 kb on - strand at 720.995 kb on + strand at 720.995 kb on + strand at 721.101 kb on - strand at 721.178 kb on + strand, within Dshi_0713 at 721.265 kb on - strand, within Dshi_0713 at 721.453 kb on + strand, within Dshi_0713 at 721.470 kb on + strand, within Dshi_0713 at 721.473 kb on + strand, within Dshi_0713 at 721.539 kb on + strand, within Dshi_0713 at 721.710 kb on + strand, within Dshi_0713 at 721.715 kb on + strand, within Dshi_0713 at 721.795 kb on - strand, within Dshi_0713 at 721.831 kb on - strand, within Dshi_0713 at 721.889 kb on + strand at 721.904 kb on + strand at 721.908 kb on + strand at 721.923 kb on + strand at 721.943 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 719,396 + -0.4 719,396 + +1.7 719,422 + Dshi_0711 0.11 +0.4 719,638 - Dshi_0711 0.34 -0.4 719,681 - Dshi_0711 0.39 +0.2 719,787 - Dshi_0711 0.50 -0.1 719,787 - Dshi_0711 0.50 +0.3 719,880 - Dshi_0711 0.60 -0.4 719,936 - Dshi_0711 0.66 -0.5 719,938 + Dshi_0711 0.66 -0.4 719,982 + Dshi_0711 0.71 +0.1 720,083 + Dshi_0711 0.82 -0.3 720,091 - Dshi_0711 0.83 +0.3 720,134 + Dshi_0711 0.87 -0.1 720,168 + -0.6 720,330 + +0.8 720,330 + +0.0 720,338 - -0.6 720,353 + +0.9 720,355 - -0.4 720,368 + -0.5 720,455 + Dshi_0712 0.18 -0.2 720,474 + Dshi_0712 0.21 +0.4 720,608 + Dshi_0712 0.43 -1.4 720,648 - Dshi_0712 0.49 -0.5 720,680 + Dshi_0712 0.54 -1.2 720,685 + Dshi_0712 0.55 -1.2 720,705 + Dshi_0712 0.58 -1.6 720,840 - Dshi_0712 0.80 +0.3 720,865 + Dshi_0712 0.84 -0.0 720,892 + Dshi_0712 0.88 +0.3 720,906 - +0.4 720,964 - -1.1 720,995 + -2.3 720,995 + +0.0 721,101 - +0.2 721,178 + Dshi_0713 0.12 -0.4 721,265 - Dshi_0713 0.22 +0.2 721,453 + Dshi_0713 0.44 +1.2 721,470 + Dshi_0713 0.46 -0.0 721,473 + Dshi_0713 0.46 -0.3 721,539 + Dshi_0713 0.54 +0.6 721,710 + Dshi_0713 0.74 +0.5 721,715 + Dshi_0713 0.74 -0.8 721,795 - Dshi_0713 0.84 +0.1 721,831 - Dshi_0713 0.88 +0.5 721,889 + -0.0 721,904 + +0.4 721,908 + -0.4 721,923 + +0.5 721,943 + -0.4
Or see this region's nucleotide sequence