Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0550

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.004 mg/ml
536,263	-		Dshi_0548	0.89	-0.0
536,285	+				+0.5
536,349	+				+1.2
536,349	+				-0.4
536,361	+				-0.6
536,401	+				-0.3
536,414	-				-0.8
536,775	+		Dshi_0549	0.51	-0.0
536,784	-		Dshi_0549	0.52	-0.4
536,792	+		Dshi_0549	0.53	+0.6
536,794	-		Dshi_0549	0.53	-0.2
536,800	-		Dshi_0549	0.54	-0.6
536,854	-		Dshi_0549	0.60	-0.1
536,864	-		Dshi_0549	0.62	+0.2
536,871	+		Dshi_0549	0.63	-0.2
536,879	+		Dshi_0549	0.63	+0.2
536,879	+		Dshi_0549	0.63	-0.0
536,906	+		Dshi_0549	0.67	-0.2
536,917	+		Dshi_0549	0.68	-1.3
536,924	-		Dshi_0549	0.69	-0.8
536,925	-		Dshi_0549	0.69	-0.1
536,994	+		Dshi_0549	0.78	-0.8
537,005	+		Dshi_0549	0.79	+0.3
537,022	+		Dshi_0549	0.81	-0.2
537,027	+		Dshi_0549	0.82	-0.4
537,035	-		Dshi_0549	0.83	+1.2
537,035	-		Dshi_0549	0.83	-0.0
537,053	+		Dshi_0549	0.85	-0.8
537,053	+		Dshi_0549	0.85	-0.8
537,053	+		Dshi_0549	0.85	-0.4
537,061	-		Dshi_0549	0.86	-0.2
537,061	-		Dshi_0549	0.86	+0.0
537,061	-		Dshi_0549	0.86	+0.6
537,061	-		Dshi_0549	0.86	+1.2
537,083	-		Dshi_0549	0.88	-0.3
537,083	-		Dshi_0549	0.88	-2.1
537,109	+				-0.7
537,275	-				+0.6
537,327	+				-1.5
537,382	+		Dshi_0550	0.14	-1.4
537,399	+		Dshi_0550	0.16	-0.4
537,438	+		Dshi_0550	0.20	+0.2
537,481	+		Dshi_0550	0.24	-1.2
537,481	+		Dshi_0550	0.24	-2.0
537,487	+		Dshi_0550	0.25	-2.2
537,495	-		Dshi_0550	0.26	-0.1
537,550	+		Dshi_0550	0.31	-1.1
537,550	+		Dshi_0550	0.31	-1.8
537,550	+		Dshi_0550	0.31	-3.4
537,550	+		Dshi_0550	0.31	-0.8
537,550	+		Dshi_0550	0.31	-1.6
537,550	+		Dshi_0550	0.31	-1.6
537,553	-		Dshi_0550	0.32	-0.8
537,558	-		Dshi_0550	0.32	-1.8
537,563	-		Dshi_0550	0.33	-2.2
537,569	+		Dshi_0550	0.33	-1.7
537,569	+		Dshi_0550	0.33	-2.2
537,575	-		Dshi_0550	0.34	-2.4
537,657	+		Dshi_0550	0.42	-1.1
537,672	+		Dshi_0550	0.44	-1.1
537,680	-		Dshi_0550	0.45	-1.1
537,680	-		Dshi_0550	0.45	-2.2
537,712	+		Dshi_0550	0.48	-0.5
537,748	+		Dshi_0550	0.52	-2.2
537,791	+		Dshi_0550	0.56	-1.2
537,791	+		Dshi_0550	0.56	-3.5
537,798	-		Dshi_0550	0.57	-0.8
537,836	+		Dshi_0550	0.61	-3.6
537,845	-		Dshi_0550	0.62	-2.0
537,921	-		Dshi_0550	0.69	-1.9
537,929	-		Dshi_0550	0.70	-3.4
537,952	-		Dshi_0550	0.73	-1.7
537,967	+		Dshi_0550	0.74	-3.3
537,975	-		Dshi_0550	0.75	-2.2
537,976	+		Dshi_0550	0.75	-2.1
537,977	+		Dshi_0550	0.75	-3.0
537,977	+		Dshi_0550	0.75	+0.5
537,979	-		Dshi_0550	0.75	-0.9
537,983	+		Dshi_0550	0.76	-2.2
537,984	-		Dshi_0550	0.76	-0.8
538,002	-		Dshi_0550	0.78	-1.3
538,135	-				-2.0
538,137	+				-1.6
538,137	+				-3.2
538,174	-				-1.2
538,186	-				+0.3
538,229	-				+0.2
538,234	+				+0.2
538,242	-				+1.0
538,305	+				+0.1
538,310	+				-1.4
538,310	+				+0.3
538,350	-		Dshi_0551	0.11	-0.2
538,368	+		Dshi_0551	0.13	+0.3
538,376	-		Dshi_0551	0.13	-0.7
538,378	-		Dshi_0551	0.14	-0.3
538,476	+		Dshi_0551	0.23	+0.2
538,494	+		Dshi_0551	0.25	-0.5
538,523	+		Dshi_0551	0.27	-0.5
538,532	+		Dshi_0551	0.28	+1.0
538,572	+		Dshi_0551	0.32	-0.1
538,572	+		Dshi_0551	0.32	-0.5
538,581	+		Dshi_0551	0.33	-0.4
538,585	-		Dshi_0551	0.33	-0.7
538,591	+		Dshi_0551	0.34	+0.4
538,613	+		Dshi_0551	0.36	-0.3
538,618	-		Dshi_0551	0.36	+0.5
538,637	+		Dshi_0551	0.38	+2.2
538,688	-		Dshi_0551	0.43	-0.3
538,757	+		Dshi_0551	0.50	+0.6
538,882	+		Dshi_0551	0.62	+0.7
538,940	-		Dshi_0551	0.67	+0.2
539,118	+		Dshi_0551	0.84	-2.0
539,127	-		Dshi_0551	0.85	-1.2