Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0531

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0530 and Dshi_0531 are separated by 74 nucleotidesDshi_0531 and Dshi_0532 are separated by 223 nucleotides Dshi_0530: Dshi_0530 - ABC transporter related (RefSeq), at 514,281 to 515,777 _0530 Dshi_0531: Dshi_0531 - ABC sugar transporter, periplasmic ligand binding protein (RefSeq), at 515,852 to 516,841 _0531 Dshi_0532: Dshi_0532 - transcriptional regulator, DeoR family (RefSeq), at 517,065 to 518,039 _0532 Position (kb) 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 514.978 kb on + strand, within Dshi_0530at 514.992 kb on - strand, within Dshi_0530at 514.996 kb on - strand, within Dshi_0530at 515.047 kb on - strand, within Dshi_0530at 515.047 kb on - strand, within Dshi_0530at 515.076 kb on + strand, within Dshi_0530at 515.125 kb on + strand, within Dshi_0530at 515.125 kb on + strand, within Dshi_0530at 515.170 kb on - strand, within Dshi_0530at 515.272 kb on + strand, within Dshi_0530at 515.325 kb on - strand, within Dshi_0530at 515.474 kb on - strand, within Dshi_0530at 515.554 kb on - strand, within Dshi_0530at 515.599 kb on + strand, within Dshi_0530at 515.607 kb on - strand, within Dshi_0530at 515.617 kb on + strand, within Dshi_0530at 515.620 kb on - strand, within Dshi_0530at 515.654 kb on + strandat 515.694 kb on - strandat 515.700 kb on + strandat 515.714 kb on + strandat 515.719 kb on + strandat 515.760 kb on + strandat 515.760 kb on + strandat 515.768 kb on - strandat 515.768 kb on - strandat 515.768 kb on - strandat 515.811 kb on + strandat 515.819 kb on - strandat 515.840 kb on - strandat 515.944 kb on - strandat 515.974 kb on + strand, within Dshi_0531at 516.003 kb on + strand, within Dshi_0531at 516.029 kb on + strand, within Dshi_0531at 516.119 kb on + strand, within Dshi_0531at 516.234 kb on + strand, within Dshi_0531at 516.242 kb on - strand, within Dshi_0531at 516.262 kb on - strand, within Dshi_0531at 516.325 kb on + strand, within Dshi_0531at 516.345 kb on + strand, within Dshi_0531at 516.396 kb on + strand, within Dshi_0531at 516.527 kb on + strand, within Dshi_0531at 516.535 kb on - strand, within Dshi_0531at 516.585 kb on - strand, within Dshi_0531at 516.593 kb on - strand, within Dshi_0531at 516.649 kb on + strand, within Dshi_0531at 516.750 kb on + strandat 516.776 kb on - strandat 516.776 kb on - strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.823 kb on - strandat 516.848 kb on - strandat 516.899 kb on - strandat 516.946 kb on - strandat 516.951 kb on + strandat 516.951 kb on - strandat 517.069 kb on - strandat 517.089 kb on + strandat 517.141 kb on + strandat 517.175 kb on + strand, within Dshi_0532at 517.210 kb on + strand, within Dshi_0532at 517.218 kb on - strand, within Dshi_0532at 517.282 kb on - strand, within Dshi_0532at 517.595 kb on - strand, within Dshi_0532at 517.650 kb on + strand, within Dshi_0532at 517.695 kb on + strand, within Dshi_0532at 517.703 kb on - strand, within Dshi_0532at 517.713 kb on - strand, within Dshi_0532at 517.736 kb on + strand, within Dshi_0532at 517.751 kb on + strand, within Dshi_0532at 517.812 kb on - strand, within Dshi_0532at 517.824 kb on + strand, within Dshi_0532

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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514,978 + Dshi_0530 0.47 +0.1
514,992 - Dshi_0530 0.47 +0.5
514,996 - Dshi_0530 0.48 +0.5
515,047 - Dshi_0530 0.51 +0.5
515,047 - Dshi_0530 0.51 -1.0
515,076 + Dshi_0530 0.53 +0.2
515,125 + Dshi_0530 0.56 -0.8
515,125 + Dshi_0530 0.56 -0.5
515,170 - Dshi_0530 0.59 +0.2
515,272 + Dshi_0530 0.66 +0.3
515,325 - Dshi_0530 0.70 -0.6
515,474 - Dshi_0530 0.80 -0.5
515,554 - Dshi_0530 0.85 -1.3
515,599 + Dshi_0530 0.88 -0.4
515,607 - Dshi_0530 0.89 +1.0
515,617 + Dshi_0530 0.89 +0.8
515,620 - Dshi_0530 0.89 +0.5
515,654 + -0.3
515,694 - +0.2
515,700 + -1.2
515,714 + -0.4
515,719 + -0.4
515,760 + -0.4
515,760 + +0.4
515,768 - +0.4
515,768 - +0.3
515,768 - -0.4
515,811 + +0.1
515,819 - -0.8
515,840 - -0.2
515,944 - +1.8
515,974 + Dshi_0531 0.12 +0.9
516,003 + Dshi_0531 0.15 -0.1
516,029 + Dshi_0531 0.18 -0.4
516,119 + Dshi_0531 0.27 -0.7
516,234 + Dshi_0531 0.39 +0.4
516,242 - Dshi_0531 0.39 -0.7
516,262 - Dshi_0531 0.41 +0.8
516,325 + Dshi_0531 0.48 -0.3
516,345 + Dshi_0531 0.50 -0.1
516,396 + Dshi_0531 0.55 +0.6
516,527 + Dshi_0531 0.68 +0.4
516,535 - Dshi_0531 0.69 -0.9
516,585 - Dshi_0531 0.74 +0.4
516,593 - Dshi_0531 0.75 -0.4
516,649 + Dshi_0531 0.81 -0.0
516,750 + -0.2
516,776 - -0.3
516,776 - -0.1
516,815 + +0.6
516,815 + -0.4
516,815 + +0.2
516,823 - -0.2
516,848 - -0.8
516,899 - -0.9
516,946 - +0.1
516,951 + -0.7
516,951 - -0.5
517,069 - -0.3
517,089 + +0.9
517,141 + -0.4
517,175 + Dshi_0532 0.11 -0.7
517,210 + Dshi_0532 0.15 -0.6
517,218 - Dshi_0532 0.16 +0.3
517,282 - Dshi_0532 0.22 +0.7
517,595 - Dshi_0532 0.54 +1.0
517,650 + Dshi_0532 0.60 -1.4
517,695 + Dshi_0532 0.65 +0.4
517,703 - Dshi_0532 0.65 -0.1
517,713 - Dshi_0532 0.66 +0.0
517,736 + Dshi_0532 0.69 +0.8
517,751 + Dshi_0532 0.70 -0.8
517,812 - Dshi_0532 0.77 +0.2
517,824 + Dshi_0532 0.78 -1.8

Or see this region's nucleotide sequence