Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0462

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0460 and Dshi_0461 overlap by 4 nucleotidesDshi_0461 and Dshi_0462 overlap by 4 nucleotidesDshi_0462 and Dshi_0463 are separated by 172 nucleotidesDshi_0463 and Dshi_0464 are separated by 23 nucleotides Dshi_0460: Dshi_0460 - hypothetical protein (RefSeq), at 446,220 to 447,119 _0460 Dshi_0461: Dshi_0461 - hypothetical protein (RefSeq), at 447,116 to 447,790 _0461 Dshi_0462: Dshi_0462 - hypothetical protein (RefSeq), at 447,787 to 448,983 _0462 Dshi_0463: Dshi_0463 - transposase IS3/IS911 family protein (RefSeq), at 449,156 to 449,422 _0463 Dshi_0464: Dshi_0464 - Integrase catalytic region (RefSeq), at 449,446 to 450,267 _0464 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2at 446.791 kb on + strand, within Dshi_0460at 446.826 kb on - strand, within Dshi_0460at 446.831 kb on - strand, within Dshi_0460at 446.870 kb on + strand, within Dshi_0460at 446.873 kb on - strand, within Dshi_0460at 446.892 kb on + strand, within Dshi_0460at 446.937 kb on + strand, within Dshi_0460at 446.949 kb on + strand, within Dshi_0460at 447.071 kb on - strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.122 kb on - strandat 447.135 kb on - strandat 447.142 kb on + strandat 447.159 kb on - strandat 447.166 kb on + strandat 447.190 kb on - strand, within Dshi_0461at 447.214 kb on + strand, within Dshi_0461at 447.235 kb on + strand, within Dshi_0461at 447.276 kb on - strand, within Dshi_0461at 447.286 kb on - strand, within Dshi_0461at 447.286 kb on - strand, within Dshi_0461at 447.373 kb on + strand, within Dshi_0461at 447.379 kb on - strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.389 kb on - strand, within Dshi_0461at 447.389 kb on - strand, within Dshi_0461at 447.394 kb on - strand, within Dshi_0461at 447.408 kb on + strand, within Dshi_0461at 447.408 kb on + strand, within Dshi_0461at 447.416 kb on - strand, within Dshi_0461at 447.458 kb on - strand, within Dshi_0461at 447.496 kb on + strand, within Dshi_0461at 447.512 kb on + strand, within Dshi_0461at 447.557 kb on + strand, within Dshi_0461at 447.602 kb on - strand, within Dshi_0461at 447.625 kb on - strand, within Dshi_0461at 447.660 kb on - strand, within Dshi_0461at 447.685 kb on + strand, within Dshi_0461at 447.691 kb on - strand, within Dshi_0461at 447.693 kb on - strand, within Dshi_0461at 447.729 kb on - strandat 447.731 kb on - strandat 447.802 kb on - strandat 447.804 kb on - strandat 447.909 kb on + strand, within Dshi_0462at 447.910 kb on - strand, within Dshi_0462at 447.934 kb on - strand, within Dshi_0462at 447.950 kb on - strand, within Dshi_0462at 447.970 kb on + strand, within Dshi_0462at 447.983 kb on - strand, within Dshi_0462at 447.984 kb on - strand, within Dshi_0462at 447.989 kb on - strand, within Dshi_0462at 447.994 kb on - strand, within Dshi_0462at 448.001 kb on + strand, within Dshi_0462at 448.009 kb on - strand, within Dshi_0462at 448.011 kb on + strand, within Dshi_0462at 448.019 kb on - strand, within Dshi_0462at 448.023 kb on + strand, within Dshi_0462at 448.031 kb on - strand, within Dshi_0462at 448.047 kb on - strand, within Dshi_0462at 448.057 kb on - strand, within Dshi_0462at 448.102 kb on + strand, within Dshi_0462at 448.113 kb on + strand, within Dshi_0462at 448.127 kb on + strand, within Dshi_0462at 448.222 kb on + strand, within Dshi_0462at 448.223 kb on + strand, within Dshi_0462at 448.228 kb on + strand, within Dshi_0462at 448.228 kb on + strand, within Dshi_0462at 448.294 kb on - strand, within Dshi_0462at 448.301 kb on + strand, within Dshi_0462at 448.332 kb on + strand, within Dshi_0462at 448.340 kb on + strand, within Dshi_0462at 448.349 kb on - strand, within Dshi_0462at 448.373 kb on + strand, within Dshi_0462at 448.455 kb on + strand, within Dshi_0462at 448.465 kb on + strand, within Dshi_0462at 448.478 kb on - strand, within Dshi_0462at 448.480 kb on + strand, within Dshi_0462at 448.516 kb on - strand, within Dshi_0462at 448.525 kb on - strand, within Dshi_0462at 448.547 kb on + strand, within Dshi_0462at 448.563 kb on - strand, within Dshi_0462at 448.572 kb on - strand, within Dshi_0462at 448.574 kb on - strand, within Dshi_0462at 448.579 kb on - strand, within Dshi_0462at 448.589 kb on - strand, within Dshi_0462at 448.589 kb on - strand, within Dshi_0462at 448.596 kb on - strand, within Dshi_0462at 448.611 kb on + strand, within Dshi_0462at 448.620 kb on - strand, within Dshi_0462at 448.640 kb on + strand, within Dshi_0462at 448.645 kb on + strand, within Dshi_0462at 448.652 kb on - strand, within Dshi_0462at 448.653 kb on - strand, within Dshi_0462at 448.744 kb on - strand, within Dshi_0462at 448.754 kb on - strand, within Dshi_0462at 448.760 kb on + strand, within Dshi_0462at 448.784 kb on + strand, within Dshi_0462at 448.845 kb on + strand, within Dshi_0462at 448.934 kb on + strandat 448.944 kb on + strandat 448.995 kb on + strandat 448.995 kb on + strandat 448.995 kb on - strandat 449.003 kb on - strandat 449.025 kb on + strandat 449.031 kb on - strandat 449.033 kb on - strandat 449.033 kb on - strandat 449.063 kb on - strandat 449.071 kb on + strandat 449.079 kb on - strandat 449.081 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.090 kb on - strandat 449.090 kb on - strandat 449.090 kb on - strandat 449.095 kb on - strandat 449.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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446,791 + Dshi_0460 0.63 -0.1
446,826 - Dshi_0460 0.67 -0.5
446,831 - Dshi_0460 0.68 +1.0
446,870 + Dshi_0460 0.72 -0.1
446,873 - Dshi_0460 0.73 -0.3
446,892 + Dshi_0460 0.75 +1.0
446,937 + Dshi_0460 0.80 -0.6
446,949 + Dshi_0460 0.81 -1.8
447,071 - -0.3
447,114 + -0.9
447,114 + -0.5
447,114 + -0.2
447,122 - -0.0
447,135 - -0.6
447,142 + -0.5
447,159 - +1.0
447,166 + -0.4
447,190 - Dshi_0461 0.11 -1.1
447,214 + Dshi_0461 0.15 +2.0
447,235 + Dshi_0461 0.18 -0.3
447,276 - Dshi_0461 0.24 -0.8
447,286 - Dshi_0461 0.25 -0.5
447,286 - Dshi_0461 0.25 +1.2
447,373 + Dshi_0461 0.38 -0.6
447,379 - Dshi_0461 0.39 -1.1
447,381 + Dshi_0461 0.39 -0.1
447,381 + Dshi_0461 0.39 -0.5
447,381 + Dshi_0461 0.39 +0.6
447,381 + Dshi_0461 0.39 -0.6
447,381 + Dshi_0461 0.39 +2.0
447,389 - Dshi_0461 0.40 +1.2
447,389 - Dshi_0461 0.40 -1.2
447,394 - Dshi_0461 0.41 -0.1
447,408 + Dshi_0461 0.43 -0.6
447,408 + Dshi_0461 0.43 -0.6
447,416 - Dshi_0461 0.44 -0.1
447,458 - Dshi_0461 0.51 -0.5
447,496 + Dshi_0461 0.56 +0.2
447,512 + Dshi_0461 0.59 +0.3
447,557 + Dshi_0461 0.65 +1.0
447,602 - Dshi_0461 0.72 -2.1
447,625 - Dshi_0461 0.75 -0.0
447,660 - Dshi_0461 0.81 +0.0
447,685 + Dshi_0461 0.84 -0.0
447,691 - Dshi_0461 0.85 +0.6
447,693 - Dshi_0461 0.85 +0.2
447,729 - +1.0
447,731 - -0.1
447,802 - -2.1
447,804 - +2.1
447,909 + Dshi_0462 0.10 -0.4
447,910 - Dshi_0462 0.10 -0.4
447,934 - Dshi_0462 0.12 +0.6
447,950 - Dshi_0462 0.14 -0.5
447,970 + Dshi_0462 0.15 +0.2
447,983 - Dshi_0462 0.16 +0.1
447,984 - Dshi_0462 0.16 -0.7
447,989 - Dshi_0462 0.17 +0.2
447,994 - Dshi_0462 0.17 +1.8
448,001 + Dshi_0462 0.18 -1.0
448,009 - Dshi_0462 0.19 -0.7
448,011 + Dshi_0462 0.19 -0.1
448,019 - Dshi_0462 0.19 +1.6
448,023 + Dshi_0462 0.20 -0.8
448,031 - Dshi_0462 0.20 -0.5
448,047 - Dshi_0462 0.22 +0.9
448,057 - Dshi_0462 0.23 -0.3
448,102 + Dshi_0462 0.26 +0.6
448,113 + Dshi_0462 0.27 -1.0
448,127 + Dshi_0462 0.28 -0.5
448,222 + Dshi_0462 0.36 -0.0
448,223 + Dshi_0462 0.36 -0.2
448,228 + Dshi_0462 0.37 -1.0
448,228 + Dshi_0462 0.37 -0.6
448,294 - Dshi_0462 0.42 -0.2
448,301 + Dshi_0462 0.43 +0.9
448,332 + Dshi_0462 0.46 -0.2
448,340 + Dshi_0462 0.46 +0.1
448,349 - Dshi_0462 0.47 -0.5
448,373 + Dshi_0462 0.49 +0.2
448,455 + Dshi_0462 0.56 -1.4
448,465 + Dshi_0462 0.57 +0.7
448,478 - Dshi_0462 0.58 -0.1
448,480 + Dshi_0462 0.58 -0.3
448,516 - Dshi_0462 0.61 -0.1
448,525 - Dshi_0462 0.62 -0.1
448,547 + Dshi_0462 0.63 -1.1
448,563 - Dshi_0462 0.65 -0.2
448,572 - Dshi_0462 0.66 +0.0
448,574 - Dshi_0462 0.66 -0.7
448,579 - Dshi_0462 0.66 -0.1
448,589 - Dshi_0462 0.67 +0.1
448,589 - Dshi_0462 0.67 +0.2
448,596 - Dshi_0462 0.68 +1.0
448,611 + Dshi_0462 0.69 -0.4
448,620 - Dshi_0462 0.70 +0.0
448,640 + Dshi_0462 0.71 +0.3
448,645 + Dshi_0462 0.72 -0.2
448,652 - Dshi_0462 0.72 -0.2
448,653 - Dshi_0462 0.72 -0.4
448,744 - Dshi_0462 0.80 -0.0
448,754 - Dshi_0462 0.81 -1.1
448,760 + Dshi_0462 0.81 +0.0
448,784 + Dshi_0462 0.83 -0.9
448,845 + Dshi_0462 0.88 -0.2
448,934 + -0.2
448,944 + +1.8
448,995 + +0.8
448,995 + -1.0
448,995 - -0.4
449,003 - -0.0
449,025 + +1.2
449,031 - -0.6
449,033 - +1.5
449,033 - +0.2
449,063 - -0.7
449,071 + -0.4
449,079 - -0.1
449,081 + -0.0
449,082 + +0.8
449,082 + -0.4
449,082 + +1.0
449,082 + -0.1
449,082 + -0.0
449,090 - -0.1
449,090 - +0.3
449,090 - -0.3
449,095 - -0.2
449,110 - -0.0

Or see this region's nucleotide sequence