Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0049

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0048 and Dshi_0049 are separated by 101 nucleotidesDshi_0049 and Dshi_0050 overlap by 4 nucleotidesDshi_0050 and Dshi_0051 overlap by 4 nucleotidesDshi_0051 and Dshi_0052 are separated by 10 nucleotides Dshi_0048: Dshi_0048 - putative transposase (RefSeq), at 47,483 to 48,445 _0048 Dshi_0049: Dshi_0049 - hypothetical protein (RefSeq), at 48,547 to 48,753 _0049 Dshi_0050: Dshi_0050 - protein of unknown function DUF955 (RefSeq), at 48,750 to 49,232 _0050 Dshi_0051: Dshi_0051 - hypothetical protein (RefSeq), at 49,229 to 49,645 _0051 Dshi_0052: Dshi_0052 - hypothetical protein (RefSeq), at 49,656 to 49,868 _0052 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.559 kb on - strandat 47.568 kb on + strandat 47.590 kb on + strand, within Dshi_0048at 47.618 kb on + strand, within Dshi_0048at 47.628 kb on - strand, within Dshi_0048at 47.654 kb on + strand, within Dshi_0048at 47.662 kb on - strand, within Dshi_0048at 47.662 kb on - strand, within Dshi_0048at 47.721 kb on + strand, within Dshi_0048at 47.729 kb on - strand, within Dshi_0048at 47.729 kb on - strand, within Dshi_0048at 47.736 kb on - strand, within Dshi_0048at 47.786 kb on + strand, within Dshi_0048at 47.814 kb on + strand, within Dshi_0048at 47.923 kb on - strand, within Dshi_0048at 48.029 kb on + strand, within Dshi_0048at 48.047 kb on - strand, within Dshi_0048at 48.068 kb on - strand, within Dshi_0048at 48.070 kb on + strand, within Dshi_0048at 48.078 kb on - strand, within Dshi_0048at 48.101 kb on - strand, within Dshi_0048at 48.105 kb on - strand, within Dshi_0048at 48.141 kb on + strand, within Dshi_0048at 48.181 kb on + strand, within Dshi_0048at 48.225 kb on - strand, within Dshi_0048at 48.324 kb on + strand, within Dshi_0048at 48.374 kb on - strandat 48.400 kb on + strandat 48.402 kb on - strandat 48.501 kb on - strandat 48.621 kb on - strand, within Dshi_0049at 48.708 kb on - strand, within Dshi_0049at 49.292 kb on + strand, within Dshi_0051at 49.292 kb on + strand, within Dshi_0051at 49.297 kb on - strand, within Dshi_0051at 49.338 kb on + strand, within Dshi_0051at 49.385 kb on + strand, within Dshi_0051at 49.397 kb on + strand, within Dshi_0051at 49.405 kb on - strand, within Dshi_0051at 49.410 kb on + strand, within Dshi_0051at 49.410 kb on - strand, within Dshi_0051at 49.423 kb on - strand, within Dshi_0051at 49.492 kb on + strand, within Dshi_0051at 49.500 kb on - strand, within Dshi_0051at 49.507 kb on + strand, within Dshi_0051at 49.507 kb on + strand, within Dshi_0051at 49.513 kb on - strand, within Dshi_0051at 49.513 kb on - strand, within Dshi_0051at 49.513 kb on - strand, within Dshi_0051at 49.513 kb on - strand, within Dshi_0051at 49.521 kb on + strand, within Dshi_0051at 49.522 kb on + strand, within Dshi_0051at 49.552 kb on + strand, within Dshi_0051at 49.552 kb on + strand, within Dshi_0051at 49.640 kb on + strandat 49.648 kb on - strandat 49.648 kb on - strandat 49.648 kb on - strandat 49.648 kb on - strandat 49.648 kb on - strandat 49.652 kb on + strandat 49.652 kb on + strandat 49.660 kb on - strandat 49.660 kb on - strandat 49.660 kb on - strandat 49.660 kb on - strandat 49.660 kb on - strandat 49.660 kb on - strandat 49.660 kb on - strandat 49.703 kb on - strand, within Dshi_0052at 49.731 kb on - strand, within Dshi_0052

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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47,559 - +0.5
47,568 + -0.2
47,590 + Dshi_0048 0.11 +0.7
47,618 + Dshi_0048 0.14 +0.3
47,628 - Dshi_0048 0.15 +0.2
47,654 + Dshi_0048 0.18 +0.5
47,662 - Dshi_0048 0.19 -0.0
47,662 - Dshi_0048 0.19 -1.8
47,721 + Dshi_0048 0.25 -0.2
47,729 - Dshi_0048 0.26 +0.1
47,729 - Dshi_0048 0.26 -0.0
47,736 - Dshi_0048 0.26 +0.6
47,786 + Dshi_0048 0.31 -0.8
47,814 + Dshi_0048 0.34 -0.7
47,923 - Dshi_0048 0.46 +0.4
48,029 + Dshi_0048 0.57 -0.2
48,047 - Dshi_0048 0.59 +0.5
48,068 - Dshi_0048 0.61 +0.3
48,070 + Dshi_0048 0.61 +0.0
48,078 - Dshi_0048 0.62 -0.3
48,101 - Dshi_0048 0.64 -0.4
48,105 - Dshi_0048 0.65 +0.5
48,141 + Dshi_0048 0.68 +0.6
48,181 + Dshi_0048 0.72 -0.3
48,225 - Dshi_0048 0.77 +2.4
48,324 + Dshi_0048 0.87 -0.5
48,374 - -0.0
48,400 + -0.7
48,402 - -0.8
48,501 - +0.7
48,621 - Dshi_0049 0.36 +0.5
48,708 - Dshi_0049 0.78 +1.3
49,292 + Dshi_0051 0.15 +0.6
49,292 + Dshi_0051 0.15 +0.3
49,297 - Dshi_0051 0.16 +0.2
49,338 + Dshi_0051 0.26 -0.8
49,385 + Dshi_0051 0.37 +1.3
49,397 + Dshi_0051 0.40 +0.4
49,405 - Dshi_0051 0.42 +1.5
49,410 + Dshi_0051 0.43 +0.2
49,410 - Dshi_0051 0.43 +0.9
49,423 - Dshi_0051 0.47 -0.9
49,492 + Dshi_0051 0.63 +0.3
49,500 - Dshi_0051 0.65 -0.3
49,507 + Dshi_0051 0.67 +0.5
49,507 + Dshi_0051 0.67 +0.1
49,513 - Dshi_0051 0.68 -0.2
49,513 - Dshi_0051 0.68 +0.5
49,513 - Dshi_0051 0.68 +0.9
49,513 - Dshi_0051 0.68 -0.3
49,521 + Dshi_0051 0.70 +1.3
49,522 + Dshi_0051 0.70 -0.8
49,552 + Dshi_0051 0.77 +0.3
49,552 + Dshi_0051 0.77 +0.5
49,640 + -0.1
49,648 - +0.5
49,648 - -0.6
49,648 - +0.4
49,648 - +0.3
49,648 - +0.0
49,652 + +0.7
49,652 + +1.7
49,660 - -1.4
49,660 - +0.2
49,660 - -0.3
49,660 - -0.4
49,660 - +0.3
49,660 - +0.0
49,660 - +0.1
49,703 - Dshi_0052 0.22 -0.1
49,731 - Dshi_0052 0.35 +0.9

Or see this region's nucleotide sequence