Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0616 and DVU0617 overlap by 8 nucleotides DVU0617 and DVU0618 are separated by 29 nucleotides DVU0618 and DVU0619 are separated by 99 nucleotides DVU0619 and DVU0620 are separated by 115 nucleotides DVU0620 and DVU0621 are separated by 286 nucleotides
DVU0616: DVU0616 - hypothetical protein (TIGR), at 683,510 to 683,902
DVU0616
DVU0617: DVU0617 - hypothetical protein (TIGR), at 683,895 to 684,185
DVU0617
DVU0618: DVU0618 - hypothetical protein (TIGR), at 684,215 to 684,370
DVU0618
DVU0619: DVU0619 - sigma-54 dependent transcriptional regulator (TIGR), at 684,470 to 685,909
DVU0619
DVU0620: DVU0620 - endoribonuclease, L-PSP family (TIGR), at 686,025 to 686,408
DVU0620
DVU0621: DVU0621 - sigma-54 dependent DNA-binding response regulator (TIGR), at 686,695 to 688,092
DVU0621
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 683.530 kb on + strand at 683.538 kb on - strand at 683.642 kb on + strand, within DVU0616 at 683.708 kb on - strand, within DVU0616 at 683.782 kb on + strand, within DVU0616 at 683.810 kb on + strand, within DVU0616 at 683.826 kb on - strand, within DVU0616 at 683.837 kb on - strand, within DVU0616 at 683.864 kb on + strand at 683.872 kb on - strand at 683.931 kb on - strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.965 kb on + strand, within DVU0617 at 683.973 kb on - strand, within DVU0617 at 683.975 kb on + strand, within DVU0617 at 683.992 kb on - strand, within DVU0617 at 684.029 kb on + strand, within DVU0617 at 684.037 kb on - strand, within DVU0617 at 684.141 kb on + strand, within DVU0617 at 684.169 kb on + strand at 684.339 kb on + strand, within DVU0618 at 684.638 kb on + strand, within DVU0619 at 684.692 kb on + strand, within DVU0619 at 684.698 kb on - strand, within DVU0619 at 684.702 kb on + strand, within DVU0619 at 684.710 kb on - strand, within DVU0619 at 684.758 kb on - strand, within DVU0619 at 684.844 kb on + strand, within DVU0619 at 684.987 kb on - strand, within DVU0619 at 685.054 kb on + strand, within DVU0619 at 685.110 kb on + strand, within DVU0619 at 685.238 kb on - strand, within DVU0619 at 685.286 kb on + strand, within DVU0619 at 685.286 kb on - strand, within DVU0619 at 685.386 kb on + strand, within DVU0619 at 685.389 kb on - strand, within DVU0619 at 685.394 kb on - strand, within DVU0619 at 685.443 kb on - strand, within DVU0619 at 685.492 kb on - strand, within DVU0619 at 685.499 kb on + strand, within DVU0619 at 685.539 kb on - strand, within DVU0619 at 685.554 kb on - strand, within DVU0619 at 685.554 kb on - strand, within DVU0619 at 685.589 kb on + strand, within DVU0619 at 685.615 kb on + strand, within DVU0619 at 685.660 kb on - strand, within DVU0619 at 685.682 kb on - strand, within DVU0619 at 685.687 kb on + strand, within DVU0619 at 685.687 kb on + strand, within DVU0619 at 685.695 kb on - strand, within DVU0619 at 685.695 kb on - strand, within DVU0619 at 685.695 kb on - strand, within DVU0619 at 685.702 kb on - strand, within DVU0619 at 685.737 kb on + strand, within DVU0619 at 685.747 kb on + strand, within DVU0619 at 685.861 kb on - strand at 685.888 kb on - strand at 685.924 kb on - strand at 685.924 kb on - strand at 686.011 kb on - strand at 686.033 kb on + strand at 686.083 kb on - strand, within DVU0620 at 686.245 kb on - strand, within DVU0620 at 686.258 kb on + strand, within DVU0620 at 686.379 kb on - strand at 686.401 kb on + strand at 686.409 kb on + strand at 686.547 kb on + strand at 686.565 kb on - strand at 686.610 kb on - strand at 686.633 kb on + strand at 686.853 kb on + strand, within DVU0621 at 686.861 kb on - strand, within DVU0621 at 686.863 kb on - strand, within DVU0621
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 683,530 + +0.3 683,538 - -0.6 683,642 + DVU0616 0.34 -0.1 683,708 - DVU0616 0.50 +0.3 683,782 + DVU0616 0.69 +2.9 683,810 + DVU0616 0.76 -0.7 683,826 - DVU0616 0.80 -0.2 683,837 - DVU0616 0.83 +0.3 683,864 + -0.8 683,872 - -0.2 683,931 - DVU0617 0.12 -0.9 683,965 + DVU0617 0.24 -0.1 683,965 + DVU0617 0.24 -0.7 683,965 + DVU0617 0.24 -1.0 683,973 - DVU0617 0.27 +1.9 683,975 + DVU0617 0.27 -0.3 683,992 - DVU0617 0.33 -0.1 684,029 + DVU0617 0.46 +0.2 684,037 - DVU0617 0.49 +0.3 684,141 + DVU0617 0.85 -0.4 684,169 + -0.1 684,339 + DVU0618 0.79 -1.9 684,638 + DVU0619 0.12 -0.9 684,692 + DVU0619 0.15 -0.6 684,698 - DVU0619 0.16 -0.7 684,702 + DVU0619 0.16 -0.7 684,710 - DVU0619 0.17 -1.1 684,758 - DVU0619 0.20 +0.4 684,844 + DVU0619 0.26 -1.5 684,987 - DVU0619 0.36 -0.2 685,054 + DVU0619 0.41 +1.2 685,110 + DVU0619 0.44 -0.3 685,238 - DVU0619 0.53 -1.3 685,286 + DVU0619 0.57 -0.4 685,286 - DVU0619 0.57 +1.0 685,386 + DVU0619 0.64 -0.8 685,389 - DVU0619 0.64 -0.6 685,394 - DVU0619 0.64 -0.9 685,443 - DVU0619 0.68 -0.4 685,492 - DVU0619 0.71 +3.1 685,499 + DVU0619 0.71 +3.3 685,539 - DVU0619 0.74 -0.4 685,554 - DVU0619 0.75 -0.8 685,554 - DVU0619 0.75 -0.0 685,589 + DVU0619 0.78 -0.4 685,615 + DVU0619 0.80 -0.6 685,660 - DVU0619 0.83 -0.1 685,682 - DVU0619 0.84 -1.3 685,687 + DVU0619 0.85 -0.7 685,687 + DVU0619 0.85 +1.9 685,695 - DVU0619 0.85 -0.7 685,695 - DVU0619 0.85 +0.4 685,695 - DVU0619 0.85 -0.4 685,702 - DVU0619 0.86 -1.2 685,737 + DVU0619 0.88 -0.0 685,747 + DVU0619 0.89 -0.1 685,861 - -0.8 685,888 - +0.2 685,924 - -0.5 685,924 - +0.9 686,011 - -0.3 686,033 + -0.9 686,083 - DVU0620 0.15 +1.6 686,245 - DVU0620 0.57 -0.2 686,258 + DVU0620 0.61 +0.4 686,379 - -0.1 686,401 + -0.8 686,409 + +0.0 686,547 + +0.0 686,565 - +1.2 686,610 - +1.9 686,633 + +0.6 686,853 + DVU0621 0.11 +0.1 686,861 - DVU0621 0.12 +1.3 686,863 - DVU0621 0.12 +2.8
Or see this region's nucleotide sequence