Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0519

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0517 and DVU0518 are separated by 23 nucleotidesDVU0518 and DVU0519 overlap by 1 nucleotidesDVU0519 and DVU0520 are separated by 11 nucleotides DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026 DVU0517 DVU0518: DVU0518 - hypothetical protein (TIGR), at 592,050 to 592,514 DVU0518 DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610 DVU0519 DVU0520: DVU0520 - flagellar hook-associated protein FlgL, putative (TIGR), at 594,622 to 596,193 DVU0520 Position (kb) 592 593 594 595Strain fitness (log2 ratio) -1 0 1 2 3 4at 591.561 kb on - strand, within DVU0517at 592.036 kb on + strandat 592.050 kb on + strandat 592.050 kb on + strandat 592.091 kb on + strandat 592.091 kb on + strandat 592.099 kb on - strand, within DVU0518at 592.099 kb on - strand, within DVU0518at 592.176 kb on - strand, within DVU0518at 592.231 kb on - strand, within DVU0518at 592.251 kb on + strand, within DVU0518at 592.281 kb on + strand, within DVU0518at 592.289 kb on - strand, within DVU0518at 592.289 kb on - strand, within DVU0518at 592.289 kb on - strand, within DVU0518at 592.306 kb on - strand, within DVU0518at 592.329 kb on + strand, within DVU0518at 592.334 kb on + strand, within DVU0518at 592.337 kb on - strand, within DVU0518at 592.337 kb on - strand, within DVU0518at 592.342 kb on - strand, within DVU0518at 592.363 kb on - strand, within DVU0518at 592.372 kb on + strand, within DVU0518at 592.376 kb on + strand, within DVU0518at 592.433 kb on + strand, within DVU0518at 592.433 kb on + strand, within DVU0518at 592.539 kb on - strandat 592.539 kb on - strandat 592.574 kb on + strandat 592.639 kb on - strandat 592.791 kb on - strand, within DVU0519at 592.847 kb on + strand, within DVU0519at 592.950 kb on - strand, within DVU0519at 592.968 kb on + strand, within DVU0519at 593.076 kb on - strand, within DVU0519at 593.076 kb on - strand, within DVU0519at 593.092 kb on - strand, within DVU0519at 593.098 kb on - strand, within DVU0519at 593.101 kb on + strand, within DVU0519at 593.111 kb on + strand, within DVU0519at 593.196 kb on - strand, within DVU0519at 593.198 kb on + strand, within DVU0519at 593.198 kb on + strand, within DVU0519at 593.249 kb on - strand, within DVU0519at 593.249 kb on - strand, within DVU0519at 593.276 kb on - strand, within DVU0519at 593.317 kb on - strand, within DVU0519at 593.342 kb on - strand, within DVU0519at 593.346 kb on + strand, within DVU0519at 593.346 kb on + strand, within DVU0519at 593.346 kb on + strand, within DVU0519at 593.354 kb on + strand, within DVU0519at 593.354 kb on - strand, within DVU0519at 593.354 kb on - strand, within DVU0519at 593.354 kb on - strand, within DVU0519at 593.354 kb on - strand, within DVU0519at 593.381 kb on + strand, within DVU0519at 593.391 kb on - strand, within DVU0519at 593.454 kb on - strand, within DVU0519at 593.454 kb on - strand, within DVU0519at 593.454 kb on - strand, within DVU0519at 593.456 kb on + strand, within DVU0519at 593.464 kb on - strand, within DVU0519at 593.465 kb on + strand, within DVU0519at 593.472 kb on + strand, within DVU0519at 593.482 kb on + strand, within DVU0519at 593.482 kb on + strand, within DVU0519at 593.569 kb on + strand, within DVU0519at 593.577 kb on - strand, within DVU0519at 593.603 kb on - strand, within DVU0519at 593.617 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.689 kb on + strand, within DVU0519at 593.735 kb on + strand, within DVU0519at 593.736 kb on + strand, within DVU0519at 593.808 kb on + strand, within DVU0519at 593.818 kb on + strand, within DVU0519at 593.826 kb on - strand, within DVU0519at 593.997 kb on + strand, within DVU0519at 594.132 kb on + strand, within DVU0519at 594.138 kb on - strand, within DVU0519at 594.163 kb on - strand, within DVU0519at 594.192 kb on + strand, within DVU0519at 594.200 kb on - strand, within DVU0519at 594.248 kb on - strand, within DVU0519at 594.288 kb on + strand, within DVU0519at 594.305 kb on + strand, within DVU0519at 594.381 kb on + strand, within DVU0519at 594.390 kb on + strand, within DVU0519at 594.467 kb on - strandat 594.557 kb on + strandat 594.597 kb on + strandat 594.797 kb on - strand, within DVU0520at 594.811 kb on - strand, within DVU0520at 594.824 kb on - strand, within DVU0520at 594.826 kb on + strand, within DVU0520at 594.826 kb on + strand, within DVU0520at 594.834 kb on - strand, within DVU0520at 594.840 kb on - strand, within DVU0520at 594.865 kb on + strand, within DVU0520at 594.865 kb on + strand, within DVU0520at 594.869 kb on + strand, within DVU0520at 594.875 kb on - strand, within DVU0520at 594.888 kb on + strand, within DVU0520at 594.888 kb on + strand, within DVU0520at 594.890 kb on + strand, within DVU0520at 594.896 kb on - strand, within DVU0520at 594.896 kb on - strand, within DVU0520at 594.929 kb on + strand, within DVU0520at 594.979 kb on - strand, within DVU0520at 595.029 kb on - strand, within DVU0520at 595.093 kb on - strand, within DVU0520at 595.289 kb on + strand, within DVU0520at 595.289 kb on + strand, within DVU0520at 595.292 kb on + strand, within DVU0520at 595.301 kb on + strand, within DVU0520at 595.303 kb on - strand, within DVU0520at 595.337 kb on - strand, within DVU0520at 595.357 kb on - strand, within DVU0520at 595.389 kb on + strand, within DVU0520at 595.396 kb on + strand, within DVU0520at 595.466 kb on + strand, within DVU0520at 595.476 kb on - strand, within DVU0520at 595.510 kb on - strand, within DVU0520at 595.564 kb on + strand, within DVU0520

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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591,561 - DVU0517 0.75 -0.8
592,036 + +1.3
592,050 + -0.3
592,050 + +3.3
592,091 + +2.9
592,091 + +3.3
592,099 - DVU0518 0.11 +2.9
592,099 - DVU0518 0.11 +2.7
592,176 - DVU0518 0.27 +4.6
592,231 - DVU0518 0.39 +3.5
592,251 + DVU0518 0.43 +2.4
592,281 + DVU0518 0.50 +3.6
592,289 - DVU0518 0.51 +3.0
592,289 - DVU0518 0.51 +3.1
592,289 - DVU0518 0.51 +3.4
592,306 - DVU0518 0.55 +3.0
592,329 + DVU0518 0.60 +3.3
592,334 + DVU0518 0.61 +3.6
592,337 - DVU0518 0.62 +3.2
592,337 - DVU0518 0.62 +2.7
592,342 - DVU0518 0.63 +3.0
592,363 - DVU0518 0.67 +1.9
592,372 + DVU0518 0.69 +3.4
592,376 + DVU0518 0.70 +2.9
592,433 + DVU0518 0.82 +2.9
592,433 + DVU0518 0.82 +4.6
592,539 - +2.7
592,539 - +3.4
592,574 + +3.4
592,639 - +3.4
592,791 - DVU0519 0.13 +2.4
592,847 + DVU0519 0.16 +3.1
592,950 - DVU0519 0.21 +2.7
592,968 + DVU0519 0.22 +1.9
593,076 - DVU0519 0.27 +3.1
593,076 - DVU0519 0.27 +3.1
593,092 - DVU0519 0.28 +2.8
593,098 - DVU0519 0.28 +3.9
593,101 + DVU0519 0.28 +3.5
593,111 + DVU0519 0.28 +2.8
593,196 - DVU0519 0.33 +3.6
593,198 + DVU0519 0.33 +1.3
593,198 + DVU0519 0.33 +3.6
593,249 - DVU0519 0.35 +3.4
593,249 - DVU0519 0.35 +3.4
593,276 - DVU0519 0.36 +1.9
593,317 - DVU0519 0.38 +3.4
593,342 - DVU0519 0.39 +2.4
593,346 + DVU0519 0.40 +3.1
593,346 + DVU0519 0.40 +3.0
593,346 + DVU0519 0.40 +2.1
593,354 + DVU0519 0.40 +2.3
593,354 - DVU0519 0.40 +2.1
593,354 - DVU0519 0.40 +3.5
593,354 - DVU0519 0.40 +3.4
593,354 - DVU0519 0.40 +3.0
593,381 + DVU0519 0.41 +3.4
593,391 - DVU0519 0.42 +3.4
593,454 - DVU0519 0.45 +3.2
593,454 - DVU0519 0.45 +2.9
593,454 - DVU0519 0.45 +3.3
593,456 + DVU0519 0.45 +3.2
593,464 - DVU0519 0.45 +3.5
593,465 + DVU0519 0.45 +4.1
593,472 + DVU0519 0.46 +2.3
593,482 + DVU0519 0.46 +3.3
593,482 + DVU0519 0.46 +3.5
593,569 + DVU0519 0.50 +3.2
593,577 - DVU0519 0.51 +3.1
593,603 - DVU0519 0.52 +2.9
593,617 - DVU0519 0.53 +3.5
593,640 - DVU0519 0.54 +1.9
593,640 - DVU0519 0.54 +2.9
593,640 - DVU0519 0.54 +3.3
593,640 - DVU0519 0.54 +3.4
593,640 - DVU0519 0.54 +2.4
593,689 + DVU0519 0.56 +3.5
593,735 + DVU0519 0.58 +2.5
593,736 + DVU0519 0.58 +1.5
593,808 + DVU0519 0.62 +3.4
593,818 + DVU0519 0.62 +3.4
593,826 - DVU0519 0.63 +1.6
593,997 + DVU0519 0.71 +1.2
594,132 + DVU0519 0.77 +3.8
594,138 - DVU0519 0.77 +3.4
594,163 - DVU0519 0.79 +2.9
594,192 + DVU0519 0.80 +2.0
594,200 - DVU0519 0.80 +3.9
594,248 - DVU0519 0.83 +2.9
594,288 + DVU0519 0.85 +3.3
594,305 + DVU0519 0.85 +1.9
594,381 + DVU0519 0.89 +2.9
594,390 + DVU0519 0.89 +3.1
594,467 - +2.9
594,557 + +3.1
594,597 + +1.3
594,797 - DVU0520 0.11 +3.5
594,811 - DVU0520 0.12 +3.8
594,824 - DVU0520 0.13 +3.6
594,826 + DVU0520 0.13 +3.4
594,826 + DVU0520 0.13 +4.4
594,834 - DVU0520 0.13 +3.1
594,840 - DVU0520 0.14 +3.0
594,865 + DVU0520 0.15 +2.1
594,865 + DVU0520 0.15 +3.2
594,869 + DVU0520 0.16 +2.9
594,875 - DVU0520 0.16 +3.2
594,888 + DVU0520 0.17 +3.4
594,888 + DVU0520 0.17 +4.1
594,890 + DVU0520 0.17 +3.0
594,896 - DVU0520 0.17 +3.1
594,896 - DVU0520 0.17 +3.1
594,929 + DVU0520 0.20 +2.9
594,979 - DVU0520 0.23 +3.2
595,029 - DVU0520 0.26 +2.8
595,093 - DVU0520 0.30 +2.4
595,289 + DVU0520 0.42 +2.4
595,289 + DVU0520 0.42 +3.1
595,292 + DVU0520 0.43 +2.3
595,301 + DVU0520 0.43 +3.6
595,303 - DVU0520 0.43 +2.4
595,337 - DVU0520 0.45 +3.4
595,357 - DVU0520 0.47 +3.0
595,389 + DVU0520 0.49 +2.1
595,396 + DVU0520 0.49 +3.0
595,466 + DVU0520 0.54 +3.3
595,476 - DVU0520 0.54 +0.3
595,510 - DVU0520 0.56 +3.4
595,564 + DVU0520 0.60 +3.3

Or see this region's nucleotide sequence