Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0387 and DVU0388 are separated by 8 nucleotides DVU0388 and DVU0389 overlap by 1 nucleotides DVU0389 and glcD are separated by 25 nucleotides
DVU0387: DVU0387 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 435,519 to 436,196
DVU0387
DVU0388: DVU0388 - amino acid ABC transporter, ATP-binding protein (TIGR), at 436,205 to 436,972
DVU0388
DVU0389: DVU0389 - amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 436,972 to 437,646
DVU0389
DVU0390: glcD - glycolate oxidase, subunit GlcD, putative (TIGR), at 437,672 to 439,054
glcD
Position (kb) 436
437
438 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 435.979 kb on + strand, within DVU0387 at 435.987 kb on - strand, within DVU0387 at 435.989 kb on + strand, within DVU0387 at 436.074 kb on - strand, within DVU0387 at 436.112 kb on - strand, within DVU0387 at 436.137 kb on - strand at 436.215 kb on + strand at 436.228 kb on - strand at 436.229 kb on - strand at 436.266 kb on + strand at 436.324 kb on - strand, within DVU0388 at 436.360 kb on - strand, within DVU0388 at 436.360 kb on - strand, within DVU0388 at 436.362 kb on + strand, within DVU0388 at 436.429 kb on + strand, within DVU0388 at 436.429 kb on + strand, within DVU0388 at 436.534 kb on + strand, within DVU0388 at 436.622 kb on - strand, within DVU0388 at 436.627 kb on - strand, within DVU0388 at 436.644 kb on - strand, within DVU0388 at 436.644 kb on - strand, within DVU0388 at 436.681 kb on + strand, within DVU0388 at 436.690 kb on + strand, within DVU0388 at 436.724 kb on + strand, within DVU0388 at 436.731 kb on + strand, within DVU0388 at 436.852 kb on - strand, within DVU0388 at 436.879 kb on + strand, within DVU0388 at 436.976 kb on - strand at 437.016 kb on + strand at 437.018 kb on + strand at 437.071 kb on - strand, within DVU0389 at 437.116 kb on + strand, within DVU0389 at 437.124 kb on - strand, within DVU0389 at 437.154 kb on + strand, within DVU0389 at 437.162 kb on - strand, within DVU0389 at 437.181 kb on + strand, within DVU0389 at 437.181 kb on + strand, within DVU0389 at 437.181 kb on + strand, within DVU0389 at 437.205 kb on + strand, within DVU0389 at 437.245 kb on + strand, within DVU0389 at 437.260 kb on - strand, within DVU0389 at 437.270 kb on - strand, within DVU0389 at 437.270 kb on - strand, within DVU0389 at 437.270 kb on - strand, within DVU0389 at 437.299 kb on + strand, within DVU0389 at 437.317 kb on - strand, within DVU0389 at 437.320 kb on + strand, within DVU0389 at 437.325 kb on + strand, within DVU0389 at 437.325 kb on + strand, within DVU0389 at 437.333 kb on - strand, within DVU0389 at 437.358 kb on + strand, within DVU0389 at 437.358 kb on + strand, within DVU0389 at 437.358 kb on + strand, within DVU0389 at 437.366 kb on - strand, within DVU0389 at 437.366 kb on - strand, within DVU0389 at 437.366 kb on - strand, within DVU0389 at 437.366 kb on - strand, within DVU0389 at 437.499 kb on + strand, within DVU0389 at 437.564 kb on - strand, within DVU0389 at 437.597 kb on + strand at 437.649 kb on - strand at 437.660 kb on + strand at 437.668 kb on + strand at 437.676 kb on - strand at 437.676 kb on - strand at 437.789 kb on - strand at 437.916 kb on - strand, within glcD at 437.919 kb on + strand, within glcD at 437.937 kb on + strand, within glcD at 438.022 kb on + strand, within glcD at 438.083 kb on + strand, within glcD at 438.083 kb on + strand, within glcD at 438.091 kb on - strand, within glcD at 438.244 kb on + strand, within glcD at 438.253 kb on - strand, within glcD at 438.270 kb on - strand, within glcD at 438.288 kb on - strand, within glcD at 438.295 kb on - strand, within glcD at 438.317 kb on - strand, within glcD at 438.336 kb on - strand, within glcD at 438.343 kb on + strand, within glcD at 438.350 kb on + strand, within glcD at 438.350 kb on + strand, within glcD at 438.351 kb on - strand, within glcD at 438.357 kb on - strand, within glcD at 438.358 kb on - strand, within glcD at 438.395 kb on + strand, within glcD at 438.440 kb on + strand, within glcD at 438.450 kb on + strand, within glcD at 438.598 kb on + strand, within glcD at 438.598 kb on + strand, within glcD at 438.634 kb on + strand, within glcD at 438.642 kb on - strand, within glcD
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 435,979 + DVU0387 0.68 -0.4 435,987 - DVU0387 0.69 -0.0 435,989 + DVU0387 0.69 -1.4 436,074 - DVU0387 0.82 +1.1 436,112 - DVU0387 0.87 -0.6 436,137 - -1.1 436,215 + -0.0 436,228 - -1.7 436,229 - +1.2 436,266 + -0.6 436,324 - DVU0388 0.15 -0.6 436,360 - DVU0388 0.20 -0.5 436,360 - DVU0388 0.20 +0.0 436,362 + DVU0388 0.20 -0.8 436,429 + DVU0388 0.29 +0.2 436,429 + DVU0388 0.29 -0.4 436,534 + DVU0388 0.43 +1.7 436,622 - DVU0388 0.54 -0.0 436,627 - DVU0388 0.55 -0.2 436,644 - DVU0388 0.57 -0.5 436,644 - DVU0388 0.57 -0.4 436,681 + DVU0388 0.62 -0.7 436,690 + DVU0388 0.63 +0.7 436,724 + DVU0388 0.68 -0.5 436,731 + DVU0388 0.68 -0.8 436,852 - DVU0388 0.84 -0.4 436,879 + DVU0388 0.88 +0.7 436,976 - +0.0 437,016 + +0.3 437,018 + +1.7 437,071 - DVU0389 0.15 -0.2 437,116 + DVU0389 0.21 -0.6 437,124 - DVU0389 0.23 +0.2 437,154 + DVU0389 0.27 +1.7 437,162 - DVU0389 0.28 +0.0 437,181 + DVU0389 0.31 +1.7 437,181 + DVU0389 0.31 +0.7 437,181 + DVU0389 0.31 +0.7 437,205 + DVU0389 0.35 +1.0 437,245 + DVU0389 0.40 +0.7 437,260 - DVU0389 0.43 -0.7 437,270 - DVU0389 0.44 -0.3 437,270 - DVU0389 0.44 +0.1 437,270 - DVU0389 0.44 +1.2 437,299 + DVU0389 0.48 +3.8 437,317 - DVU0389 0.51 -0.3 437,320 + DVU0389 0.52 +0.9 437,325 + DVU0389 0.52 -0.1 437,325 + DVU0389 0.52 +0.3 437,333 - DVU0389 0.53 -0.5 437,358 + DVU0389 0.57 +0.0 437,358 + DVU0389 0.57 -0.1 437,358 + DVU0389 0.57 +2.6 437,366 - DVU0389 0.58 -0.6 437,366 - DVU0389 0.58 -0.8 437,366 - DVU0389 0.58 -0.3 437,366 - DVU0389 0.58 +0.0 437,499 + DVU0389 0.78 -0.2 437,564 - DVU0389 0.88 -0.4 437,597 + -0.9 437,649 - -0.4 437,660 + +0.2 437,668 + -0.5 437,676 - +2.1 437,676 - -0.9 437,789 - +0.0 437,916 - glcD DVU0390 0.18 -1.7 437,919 + glcD DVU0390 0.18 -0.7 437,937 + glcD DVU0390 0.19 -0.6 438,022 + glcD DVU0390 0.25 -0.8 438,083 + glcD DVU0390 0.30 -0.9 438,083 + glcD DVU0390 0.30 -0.8 438,091 - glcD DVU0390 0.30 -0.8 438,244 + glcD DVU0390 0.41 -0.7 438,253 - glcD DVU0390 0.42 +1.7 438,270 - glcD DVU0390 0.43 -0.3 438,288 - glcD DVU0390 0.45 -1.0 438,295 - glcD DVU0390 0.45 -0.5 438,317 - glcD DVU0390 0.47 -0.3 438,336 - glcD DVU0390 0.48 -0.3 438,343 + glcD DVU0390 0.49 +0.1 438,350 + glcD DVU0390 0.49 -0.1 438,350 + glcD DVU0390 0.49 +0.3 438,351 - glcD DVU0390 0.49 +2.7 438,357 - glcD DVU0390 0.50 -0.5 438,358 - glcD DVU0390 0.50 -0.6 438,395 + glcD DVU0390 0.52 -0.2 438,440 + glcD DVU0390 0.56 +1.7 438,450 + glcD DVU0390 0.56 -0.5 438,598 + glcD DVU0390 0.67 -0.1 438,598 + glcD DVU0390 0.67 +0.1 438,634 + glcD DVU0390 0.70 -0.1 438,642 - glcD DVU0390 0.70 -0.8
Or see this region's nucleotide sequence