Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0343 and DVU0344 are separated by 467 nucleotides DVU0344 and DVU0346 are separated by 346 nucleotides
DVU0343: DVU0343 - HPCH/HPAI aldolase family protein (TIGR), at 388,419 to 389,201
DVU0343
DVU0344: DVU0344 - methyl-accepting chemotaxis protein (TIGR), at 389,669 to 391,483
DVU0344
DVU0346: DVU0346 - membrane protein, putative (TIGR), at 391,830 to 393,368
DVU0346
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 389.304 kb on - strand at 389.315 kb on + strand at 389.320 kb on + strand at 389.328 kb on - strand at 389.359 kb on + strand at 389.361 kb on + strand at 389.367 kb on - strand at 389.427 kb on + strand at 389.492 kb on + strand at 389.503 kb on - strand at 389.648 kb on + strand at 389.753 kb on - strand at 389.754 kb on + strand at 389.762 kb on - strand at 389.856 kb on + strand, within DVU0344 at 389.862 kb on + strand, within DVU0344 at 389.862 kb on + strand, within DVU0344 at 389.870 kb on - strand, within DVU0344 at 389.870 kb on - strand, within DVU0344 at 389.926 kb on + strand, within DVU0344 at 389.934 kb on - strand, within DVU0344 at 389.992 kb on + strand, within DVU0344 at 390.008 kb on - strand, within DVU0344 at 390.177 kb on + strand, within DVU0344 at 390.185 kb on - strand, within DVU0344 at 390.224 kb on - strand, within DVU0344 at 390.320 kb on + strand, within DVU0344 at 390.365 kb on + strand, within DVU0344 at 390.365 kb on + strand, within DVU0344 at 390.383 kb on + strand, within DVU0344 at 390.417 kb on - strand, within DVU0344 at 390.495 kb on + strand, within DVU0344 at 390.503 kb on - strand, within DVU0344 at 390.535 kb on - strand, within DVU0344 at 390.615 kb on + strand, within DVU0344 at 390.800 kb on + strand, within DVU0344 at 390.800 kb on + strand, within DVU0344 at 390.800 kb on + strand, within DVU0344 at 390.808 kb on - strand, within DVU0344 at 390.808 kb on - strand, within DVU0344 at 390.808 kb on - strand, within DVU0344 at 390.808 kb on - strand, within DVU0344 at 390.808 kb on - strand, within DVU0344 at 390.808 kb on - strand, within DVU0344 at 390.847 kb on + strand, within DVU0344 at 390.992 kb on - strand, within DVU0344 at 391.093 kb on - strand, within DVU0344 at 391.120 kb on - strand, within DVU0344 at 391.264 kb on - strand, within DVU0344 at 391.274 kb on + strand, within DVU0344 at 391.291 kb on + strand, within DVU0344 at 391.294 kb on - strand, within DVU0344 at 391.301 kb on - strand, within DVU0344 at 391.301 kb on - strand, within DVU0344 at 391.339 kb on + strand at 391.382 kb on + strand at 391.415 kb on + strand at 391.442 kb on - strand at 391.462 kb on + strand at 391.520 kb on + strand at 391.632 kb on + strand at 391.632 kb on + strand at 391.632 kb on + strand at 391.640 kb on - strand at 391.640 kb on - strand at 391.640 kb on - strand at 391.640 kb on - strand at 391.640 kb on - strand at 391.645 kb on + strand at 391.678 kb on + strand at 391.678 kb on + strand at 391.716 kb on - strand at 391.726 kb on - strand at 391.726 kb on - strand at 391.773 kb on + strand at 391.791 kb on - strand at 391.793 kb on - strand at 391.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 389,304 - -0.4 389,315 + -1.5 389,320 + -1.2 389,328 - +1.8 389,359 + +0.8 389,361 + -0.3 389,367 - -0.5 389,427 + +0.8 389,492 + +0.2 389,503 - -0.1 389,648 + +2.0 389,753 - -0.2 389,754 + +0.6 389,762 - +1.8 389,856 + DVU0344 0.10 -1.7 389,862 + DVU0344 0.11 -0.2 389,862 + DVU0344 0.11 -0.2 389,870 - DVU0344 0.11 +0.2 389,870 - DVU0344 0.11 -0.4 389,926 + DVU0344 0.14 -1.3 389,934 - DVU0344 0.15 +0.8 389,992 + DVU0344 0.18 +1.8 390,008 - DVU0344 0.19 -2.0 390,177 + DVU0344 0.28 -0.5 390,185 - DVU0344 0.28 +1.5 390,224 - DVU0344 0.31 -2.2 390,320 + DVU0344 0.36 -1.8 390,365 + DVU0344 0.38 -0.7 390,365 + DVU0344 0.38 -0.2 390,383 + DVU0344 0.39 +1.8 390,417 - DVU0344 0.41 -0.5 390,495 + DVU0344 0.46 +0.2 390,503 - DVU0344 0.46 +0.5 390,535 - DVU0344 0.48 +1.2 390,615 + DVU0344 0.52 +1.8 390,800 + DVU0344 0.62 -0.9 390,800 + DVU0344 0.62 +2.6 390,800 + DVU0344 0.62 +0.3 390,808 - DVU0344 0.63 +0.2 390,808 - DVU0344 0.63 -0.0 390,808 - DVU0344 0.63 +1.2 390,808 - DVU0344 0.63 +0.5 390,808 - DVU0344 0.63 -0.2 390,808 - DVU0344 0.63 +1.8 390,847 + DVU0344 0.65 -0.3 390,992 - DVU0344 0.73 -0.4 391,093 - DVU0344 0.78 +0.5 391,120 - DVU0344 0.80 +0.8 391,264 - DVU0344 0.88 -0.5 391,274 + DVU0344 0.88 +2.0 391,291 + DVU0344 0.89 +4.4 391,294 - DVU0344 0.90 -0.9 391,301 - DVU0344 0.90 +0.2 391,301 - DVU0344 0.90 -1.0 391,339 + -0.5 391,382 + +0.5 391,415 + +0.0 391,442 - +0.5 391,462 + -0.0 391,520 + +0.2 391,632 + +3.2 391,632 + -0.0 391,632 + -0.2 391,640 - +0.8 391,640 - +0.2 391,640 - +1.0 391,640 - -2.5 391,640 - -0.7 391,645 + +0.1 391,678 + -0.4 391,678 + -2.6 391,716 - -1.9 391,726 - -1.0 391,726 - +0.2 391,773 + -0.5 391,791 - -0.1 391,793 - +0.5 391,854 - -0.8
Or see this region's nucleotide sequence