Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0751

Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0750 and DVU0751 are separated by 395 nucleotidesDVU0751 and DVU0752 are separated by 88 nucleotides DVU0750: DVU0750 - methyl-accepting chemotaxis protein (TIGR), at 840,322 to 842,331 DVU0750 DVU0751: DVU0751 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 842,727 to 844,517 DVU0751 DVU0752: DVU0752 - amino acid ABC transporter, amino acid-binding protein (TIGR), at 844,606 to 845,433 DVU0752 Position (kb) 842 843 844 845Strain fitness (log2 ratio) -2 -1 0 1 2 3at 841.786 kb on + strand, within DVU0750at 841.795 kb on + strand, within DVU0750at 841.941 kb on + strand, within DVU0750at 842.009 kb on - strand, within DVU0750at 842.027 kb on + strand, within DVU0750at 842.250 kb on + strandat 842.256 kb on + strandat 842.314 kb on - strandat 842.316 kb on + strandat 842.316 kb on + strandat 842.333 kb on - strandat 842.345 kb on + strandat 842.369 kb on + strandat 842.470 kb on - strandat 842.593 kb on + strandat 842.779 kb on + strandat 842.797 kb on - strandat 842.853 kb on - strandat 842.874 kb on - strandat 842.898 kb on - strandat 842.980 kb on - strand, within DVU0751at 843.006 kb on + strand, within DVU0751at 843.014 kb on - strand, within DVU0751at 843.048 kb on - strand, within DVU0751at 843.105 kb on + strand, within DVU0751at 843.113 kb on + strand, within DVU0751at 843.162 kb on - strand, within DVU0751at 843.229 kb on + strand, within DVU0751at 843.237 kb on - strand, within DVU0751at 843.271 kb on - strand, within DVU0751at 843.271 kb on - strand, within DVU0751at 843.363 kb on + strand, within DVU0751at 843.420 kb on - strand, within DVU0751at 843.455 kb on - strand, within DVU0751at 843.496 kb on - strand, within DVU0751at 843.879 kb on - strand, within DVU0751at 843.926 kb on + strand, within DVU0751at 843.957 kb on - strand, within DVU0751at 844.003 kb on + strand, within DVU0751at 844.003 kb on + strand, within DVU0751at 844.003 kb on + strand, within DVU0751at 844.011 kb on - strand, within DVU0751at 844.068 kb on + strand, within DVU0751at 844.277 kb on - strand, within DVU0751at 844.301 kb on - strand, within DVU0751at 844.325 kb on + strand, within DVU0751at 844.402 kb on - strandat 844.440 kb on + strandat 844.466 kb on - strandat 844.472 kb on + strandat 844.472 kb on + strandat 844.479 kb on + strandat 844.479 kb on + strandat 844.480 kb on - strandat 844.480 kb on - strandat 844.486 kb on + strandat 844.557 kb on - strandat 844.584 kb on + strandat 844.584 kb on + strandat 844.584 kb on + strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.599 kb on - strandat 844.599 kb on - strandat 844.897 kb on - strand, within DVU0752at 844.904 kb on + strand, within DVU0752at 844.932 kb on + strand, within DVU0752at 844.937 kb on + strand, within DVU0752at 844.945 kb on - strand, within DVU0752at 844.988 kb on + strand, within DVU0752at 845.018 kb on - strand, within DVU0752at 845.031 kb on + strand, within DVU0752at 845.036 kb on + strand, within DVU0752at 845.036 kb on + strand, within DVU0752at 845.044 kb on - strand, within DVU0752at 845.076 kb on + strand, within DVU0752at 845.189 kb on + strand, within DVU0752at 845.197 kb on - strand, within DVU0752at 845.227 kb on - strand, within DVU0752at 845.350 kb on + strand, within DVU0752at 845.358 kb on - strandat 845.397 kb on - strandat 845.411 kb on - strandat 845.421 kb on + strandat 845.455 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
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841,786 + DVU0750 0.73 +0.0
841,795 + DVU0750 0.73 -0.2
841,941 + DVU0750 0.81 +2.6
842,009 - DVU0750 0.84 -0.4
842,027 + DVU0750 0.85 +0.2
842,250 + -1.6
842,256 + -1.5
842,314 - +0.6
842,316 + +0.1
842,316 + -0.4
842,333 - -0.2
842,345 + -0.5
842,369 + -0.4
842,470 - -0.7
842,593 + -0.2
842,779 + -0.5
842,797 - +1.9
842,853 - -0.3
842,874 - +0.6
842,898 - +0.3
842,980 - DVU0751 0.14 -0.4
843,006 + DVU0751 0.16 -0.1
843,014 - DVU0751 0.16 +1.5
843,048 - DVU0751 0.18 -1.5
843,105 + DVU0751 0.21 +0.3
843,113 + DVU0751 0.22 -1.2
843,162 - DVU0751 0.24 +2.9
843,229 + DVU0751 0.28 -0.4
843,237 - DVU0751 0.28 -0.1
843,271 - DVU0751 0.30 -1.9
843,271 - DVU0751 0.30 +1.9
843,363 + DVU0751 0.36 -0.1
843,420 - DVU0751 0.39 -0.9
843,455 - DVU0751 0.41 +0.2
843,496 - DVU0751 0.43 -0.5
843,879 - DVU0751 0.64 -0.2
843,926 + DVU0751 0.67 -0.2
843,957 - DVU0751 0.69 -0.6
844,003 + DVU0751 0.71 -0.8
844,003 + DVU0751 0.71 +1.0
844,003 + DVU0751 0.71 +1.9
844,011 - DVU0751 0.72 -0.8
844,068 + DVU0751 0.75 +0.4
844,277 - DVU0751 0.87 +1.2
844,301 - DVU0751 0.88 -0.7
844,325 + DVU0751 0.89 +0.2
844,402 - +0.4
844,440 + -0.7
844,466 - -1.0
844,472 + -0.3
844,472 + +0.2
844,479 + +1.9
844,479 + +1.9
844,480 - -0.9
844,480 - -1.1
844,486 + -0.2
844,557 - -0.4
844,584 + +3.5
844,584 + -0.5
844,584 + -0.8
844,592 - +1.5
844,592 - -1.7
844,592 - +0.6
844,592 - +1.3
844,599 - -0.2
844,599 - -1.1
844,897 - DVU0752 0.35 -1.2
844,904 + DVU0752 0.36 -0.4
844,932 + DVU0752 0.39 +1.3
844,937 + DVU0752 0.40 -0.7
844,945 - DVU0752 0.41 +2.7
844,988 + DVU0752 0.46 -0.9
845,018 - DVU0752 0.50 -0.2
845,031 + DVU0752 0.51 -0.2
845,036 + DVU0752 0.52 +0.9
845,036 + DVU0752 0.52 -0.1
845,044 - DVU0752 0.53 -0.4
845,076 + DVU0752 0.57 -0.8
845,189 + DVU0752 0.70 -0.6
845,197 - DVU0752 0.71 -0.3
845,227 - DVU0752 0.75 +0.5
845,350 + DVU0752 0.90 +0.2
845,358 - +1.3
845,397 - -0.9
845,411 - +1.4
845,421 + -0.6
845,455 + -0.0

Or see this region's nucleotide sequence