Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06524

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotidesH281DRAFT_06524 and H281DRAFT_06525 are separated by 6 nucleotides H281DRAFT_06522: H281DRAFT_06522 - hypothetical protein, at 1,983 to 2,420 _06522 H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310 _06523 H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122 _06524 H281DRAFT_06525: H281DRAFT_06525 - cobalamin biosynthesis protein CobW, at 7,129 to 8,310 _06525 Position (kb) 3 4 5 6 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2.344 kb on + strandat 2.410 kb on + strandat 2.564 kb on - strand, within H281DRAFT_06523at 2.649 kb on + strand, within H281DRAFT_06523at 2.703 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.959 kb on - strand, within H281DRAFT_06523at 2.959 kb on - strand, within H281DRAFT_06523at 3.491 kb on + strandat 3.491 kb on + strandat 3.492 kb on - strandat 3.548 kb on + strandat 3.554 kb on + strandat 3.555 kb on - strandat 3.560 kb on + strandat 3.594 kb on + strandat 3.596 kb on + strandat 3.597 kb on - strandat 3.611 kb on - strandat 3.720 kb on - strand, within H281DRAFT_06524at 3.786 kb on - strand, within H281DRAFT_06524at 3.835 kb on + strand, within H281DRAFT_06524at 3.835 kb on + strand, within H281DRAFT_06524at 3.905 kb on + strand, within H281DRAFT_06524at 3.906 kb on - strand, within H281DRAFT_06524at 3.906 kb on - strand, within H281DRAFT_06524at 3.929 kb on + strand, within H281DRAFT_06524at 3.930 kb on - strand, within H281DRAFT_06524at 4.387 kb on + strand, within H281DRAFT_06524at 4.713 kb on + strand, within H281DRAFT_06524at 4.713 kb on + strand, within H281DRAFT_06524at 4.714 kb on - strand, within H281DRAFT_06524at 4.719 kb on + strand, within H281DRAFT_06524at 5.092 kb on + strand, within H281DRAFT_06524at 5.151 kb on + strand, within H281DRAFT_06524at 5.152 kb on - strand, within H281DRAFT_06524at 5.152 kb on - strand, within H281DRAFT_06524at 5.152 kb on - strand, within H281DRAFT_06524at 5.163 kb on + strand, within H281DRAFT_06524at 5.185 kb on + strand, within H281DRAFT_06524at 5.225 kb on + strand, within H281DRAFT_06524at 5.226 kb on - strand, within H281DRAFT_06524at 5.226 kb on - strand, within H281DRAFT_06524at 5.228 kb on + strand, within H281DRAFT_06524at 5.385 kb on + strand, within H281DRAFT_06524at 5.416 kb on - strand, within H281DRAFT_06524at 5.416 kb on - strand, within H281DRAFT_06524at 5.516 kb on + strand, within H281DRAFT_06524at 5.517 kb on - strand, within H281DRAFT_06524at 5.528 kb on + strand, within H281DRAFT_06524at 5.562 kb on - strand, within H281DRAFT_06524at 5.615 kb on - strand, within H281DRAFT_06524at 5.745 kb on - strand, within H281DRAFT_06524at 5.745 kb on - strand, within H281DRAFT_06524at 5.831 kb on - strand, within H281DRAFT_06524at 5.961 kb on - strand, within H281DRAFT_06524at 6.171 kb on + strand, within H281DRAFT_06524at 6.196 kb on - strand, within H281DRAFT_06524at 6.368 kb on - strand, within H281DRAFT_06524at 6.368 kb on - strand, within H281DRAFT_06524at 6.403 kb on - strand, within H281DRAFT_06524at 6.845 kb on + strandat 6.846 kb on - strandat 6.943 kb on + strandat 6.943 kb on + strandat 7.080 kb on + strandat 7.081 kb on - strandat 7.284 kb on - strand, within H281DRAFT_06525at 7.284 kb on - strand, within H281DRAFT_06525at 7.405 kb on + strand, within H281DRAFT_06525at 7.548 kb on + strand, within H281DRAFT_06525at 8.015 kb on + strand, within H281DRAFT_06525at 8.070 kb on + strand, within H281DRAFT_06525

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,344 + -0.7
2,410 + -0.7
2,564 - H281DRAFT_06523 0.31 +0.3
2,649 + H281DRAFT_06523 0.39 -1.3
2,703 + H281DRAFT_06523 0.44 +1.8
2,857 + H281DRAFT_06523 0.58 -0.1
2,857 + H281DRAFT_06523 0.58 +2.0
2,958 + H281DRAFT_06523 0.67 -0.4
2,958 + H281DRAFT_06523 0.67 +0.6
2,958 + H281DRAFT_06523 0.67 -0.6
2,958 + H281DRAFT_06523 0.67 -0.6
2,959 - H281DRAFT_06523 0.67 +1.3
2,959 - H281DRAFT_06523 0.67 +1.1
3,491 + +1.0
3,491 + +1.2
3,492 - +1.1
3,548 + +1.1
3,554 + +0.7
3,555 - +1.0
3,560 + -1.0
3,594 + -1.1
3,596 + -1.9
3,597 - +0.3
3,611 - +0.4
3,720 - H281DRAFT_06524 0.11 -0.5
3,786 - H281DRAFT_06524 0.13 +2.7
3,835 + H281DRAFT_06524 0.14 +0.3
3,835 + H281DRAFT_06524 0.14 +1.6
3,905 + H281DRAFT_06524 0.16 +0.6
3,906 - H281DRAFT_06524 0.16 +0.8
3,906 - H281DRAFT_06524 0.16 +2.4
3,929 + H281DRAFT_06524 0.16 -1.3
3,930 - H281DRAFT_06524 0.16 +0.2
4,387 + H281DRAFT_06524 0.28 -0.0
4,713 + H281DRAFT_06524 0.37 -1.0
4,713 + H281DRAFT_06524 0.37 +1.4
4,714 - H281DRAFT_06524 0.37 +1.3
4,719 + H281DRAFT_06524 0.37 -1.6
5,092 + H281DRAFT_06524 0.47 +0.6
5,151 + H281DRAFT_06524 0.48 +2.0
5,152 - H281DRAFT_06524 0.48 +0.3
5,152 - H281DRAFT_06524 0.48 -0.4
5,152 - H281DRAFT_06524 0.48 -0.7
5,163 + H281DRAFT_06524 0.49 +0.0
5,185 + H281DRAFT_06524 0.49 -1.7
5,225 + H281DRAFT_06524 0.50 +0.4
5,226 - H281DRAFT_06524 0.50 +1.2
5,226 - H281DRAFT_06524 0.50 +0.7
5,228 + H281DRAFT_06524 0.50 +1.2
5,385 + H281DRAFT_06524 0.54 -1.9
5,416 - H281DRAFT_06524 0.55 -4.2
5,416 - H281DRAFT_06524 0.55 +1.8
5,516 + H281DRAFT_06524 0.58 -0.0
5,517 - H281DRAFT_06524 0.58 -0.0
5,528 + H281DRAFT_06524 0.58 -0.1
5,562 - H281DRAFT_06524 0.59 +0.2
5,615 - H281DRAFT_06524 0.60 -0.4
5,745 - H281DRAFT_06524 0.64 -2.0
5,745 - H281DRAFT_06524 0.64 -3.2
5,831 - H281DRAFT_06524 0.66 +0.1
5,961 - H281DRAFT_06524 0.70 -0.3
6,171 + H281DRAFT_06524 0.75 +2.2
6,196 - H281DRAFT_06524 0.76 -0.5
6,368 - H281DRAFT_06524 0.80 +0.6
6,368 - H281DRAFT_06524 0.80 -0.4
6,403 - H281DRAFT_06524 0.81 -0.9
6,845 + -0.4
6,846 - -1.0
6,943 + +1.9
6,943 + +0.9
7,080 + +0.3
7,081 - +1.2
7,284 - H281DRAFT_06525 0.13 -1.2
7,284 - H281DRAFT_06525 0.13 -1.8
7,405 + H281DRAFT_06525 0.23 -2.6
7,548 + H281DRAFT_06525 0.35 +0.3
8,015 + H281DRAFT_06525 0.75 +0.5
8,070 + H281DRAFT_06525 0.80 -0.9

Or see this region's nucleotide sequence