Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06006

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06005 and H281DRAFT_06006 are separated by 279 nucleotidesH281DRAFT_06006 and H281DRAFT_06007 are separated by 105 nucleotides H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788 _06005 H281DRAFT_06006: H281DRAFT_06006 - MEKHLA domain-containing protein, at 7,068 to 7,523 _06006 H281DRAFT_06007: H281DRAFT_06007 - amino acid ABC transporter substrate-binding protein, PAAT family, at 7,629 to 8,360 _06007 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.079 kb on + strandat 6.079 kb on + strandat 6.108 kb on - strandat 6.112 kb on - strandat 6.152 kb on + strand, within H281DRAFT_06005at 6.173 kb on - strand, within H281DRAFT_06005at 6.212 kb on + strand, within H281DRAFT_06005at 6.247 kb on + strand, within H281DRAFT_06005at 6.389 kb on + strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.461 kb on - strand, within H281DRAFT_06005at 6.590 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.673 kb on - strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.776 kb on + strandat 6.829 kb on + strandat 6.859 kb on + strandat 6.859 kb on + strandat 6.927 kb on + strandat 7.036 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.345 kb on + strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.436 kb on + strand, within H281DRAFT_06006at 7.437 kb on - strand, within H281DRAFT_06006at 7.457 kb on + strand, within H281DRAFT_06006at 7.474 kb on + strand, within H281DRAFT_06006at 7.478 kb on + strandat 7.478 kb on + strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.528 kb on + strandat 7.529 kb on - strandat 7.627 kb on + strandat 7.628 kb on - strandat 7.714 kb on + strand, within H281DRAFT_06007at 7.714 kb on + strand, within H281DRAFT_06007at 7.892 kb on - strand, within H281DRAFT_06007at 7.892 kb on - strand, within H281DRAFT_06007at 7.923 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.194 kb on - strand, within H281DRAFT_06007at 8.220 kb on - strand, within H281DRAFT_06007at 8.402 kb on + strandat 8.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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6,079 + +1.0
6,079 + +0.8
6,108 - +0.4
6,112 - +1.7
6,152 + H281DRAFT_06005 0.10 +1.6
6,173 - H281DRAFT_06005 0.13 +0.7
6,212 + H281DRAFT_06005 0.19 -2.9
6,247 + H281DRAFT_06005 0.24 -0.7
6,389 + H281DRAFT_06005 0.44 +0.2
6,390 - H281DRAFT_06005 0.44 -0.4
6,390 - H281DRAFT_06005 0.44 -0.6
6,446 - H281DRAFT_06005 0.52 -0.6
6,446 - H281DRAFT_06005 0.52 -0.2
6,461 - H281DRAFT_06005 0.54 +0.9
6,590 - H281DRAFT_06005 0.72 -0.4
6,599 - H281DRAFT_06005 0.73 +0.9
6,599 - H281DRAFT_06005 0.73 +0.9
6,602 + H281DRAFT_06005 0.74 +0.8
6,602 + H281DRAFT_06005 0.74 +0.2
6,644 - H281DRAFT_06005 0.80 -1.6
6,644 - H281DRAFT_06005 0.80 -1.2
6,673 - H281DRAFT_06005 0.84 +1.4
6,712 + H281DRAFT_06005 0.89 +0.5
6,712 + H281DRAFT_06005 0.89 +0.4
6,712 + H281DRAFT_06005 0.89 +1.7
6,713 - H281DRAFT_06005 0.89 +0.4
6,713 - H281DRAFT_06005 0.89 +1.2
6,776 + +0.6
6,829 + +0.2
6,859 + -2.7
6,859 + -0.5
6,927 + -0.8
7,036 + -0.0
7,060 + -0.3
7,060 + -0.1
7,060 + +0.2
7,060 + -0.1
7,345 + H281DRAFT_06006 0.61 +0.6
7,346 - H281DRAFT_06006 0.61 -0.3
7,346 - H281DRAFT_06006 0.61 -0.5
7,436 + H281DRAFT_06006 0.81 +0.7
7,437 - H281DRAFT_06006 0.81 -0.2
7,457 + H281DRAFT_06006 0.85 -1.8
7,474 + H281DRAFT_06006 0.89 -1.6
7,478 + +0.7
7,478 + +0.3
7,479 - +0.7
7,479 - +0.2
7,479 - -1.0
7,479 - -2.4
7,528 + +0.5
7,529 - +0.1
7,627 + -0.4
7,628 - +0.8
7,714 + H281DRAFT_06007 0.12 -0.0
7,714 + H281DRAFT_06007 0.12 +2.2
7,892 - H281DRAFT_06007 0.36 -0.2
7,892 - H281DRAFT_06007 0.36 -0.3
7,923 + H281DRAFT_06007 0.40 +1.8
8,053 + H281DRAFT_06007 0.58 +0.3
8,053 + H281DRAFT_06007 0.58 +0.2
8,054 - H281DRAFT_06007 0.58 +0.7
8,054 - H281DRAFT_06007 0.58 +1.1
8,054 - H281DRAFT_06007 0.58 +2.3
8,054 - H281DRAFT_06007 0.58 +1.1
8,193 + H281DRAFT_06007 0.77 +0.3
8,193 + H281DRAFT_06007 0.77 -3.2
8,194 - H281DRAFT_06007 0.77 -0.3
8,220 - H281DRAFT_06007 0.81 +0.9
8,402 + -0.8
8,403 - +2.7

Or see this region's nucleotide sequence