Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05934

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05933 and H281DRAFT_05934 are separated by 127 nucleotidesH281DRAFT_05934 and H281DRAFT_05935 are separated by 285 nucleotides H281DRAFT_05933: H281DRAFT_05933 - L-glutaminase, at 71,024 to 71,938 _05933 H281DRAFT_05934: H281DRAFT_05934 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 72,066 to 72,935 _05934 H281DRAFT_05935: H281DRAFT_05935 - glutamine--fructose-6-phosphate transaminase, at 73,221 to 75,050 _05935 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1 2 3at 71.468 kb on + strand, within H281DRAFT_05933at 71.585 kb on + strand, within H281DRAFT_05933at 71.585 kb on + strand, within H281DRAFT_05933at 71.585 kb on + strand, within H281DRAFT_05933at 71.586 kb on - strand, within H281DRAFT_05933at 71.586 kb on - strand, within H281DRAFT_05933at 71.742 kb on - strand, within H281DRAFT_05933at 71.742 kb on - strand, within H281DRAFT_05933at 72.124 kb on - strandat 72.124 kb on - strandat 72.622 kb on - strand, within H281DRAFT_05934at 72.736 kb on - strand, within H281DRAFT_05934at 72.931 kb on + strandat 73.174 kb on + strandat 73.175 kb on - strandat 73.175 kb on - strandat 73.234 kb on + strandat 73.434 kb on - strand, within H281DRAFT_05935at 73.561 kb on + strandat 73.792 kb on - strand, within H281DRAFT_05935

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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71,468 + H281DRAFT_05933 0.49 -2.3
71,585 + H281DRAFT_05933 0.61 -0.2
71,585 + H281DRAFT_05933 0.61 +0.2
71,585 + H281DRAFT_05933 0.61 +0.1
71,586 - H281DRAFT_05933 0.61 +0.6
71,586 - H281DRAFT_05933 0.61 -1.1
71,742 - H281DRAFT_05933 0.78 -2.2
71,742 - H281DRAFT_05933 0.78 -1.5
72,124 - +1.0
72,124 - +0.7
72,622 - H281DRAFT_05934 0.64 -0.2
72,736 - H281DRAFT_05934 0.77 +0.7
72,931 + -0.1
73,174 + +0.1
73,175 - -1.2
73,175 - -1.1
73,234 + +1.6
73,434 - H281DRAFT_05935 0.12 -0.4
73,561 + +3.2
73,792 - H281DRAFT_05935 0.31 +0.4

Or see this region's nucleotide sequence