Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05932

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05931 and H281DRAFT_05932 are separated by 398 nucleotidesH281DRAFT_05932 and H281DRAFT_05933 are separated by 105 nucleotides H281DRAFT_05931: H281DRAFT_05931 - phospholipase/carboxylesterase, at 68,274 to 68,933 _05931 H281DRAFT_05932: H281DRAFT_05932 - MFS transporter, DHA2 family, multidrug resistance protein, at 69,332 to 70,918 _05932 H281DRAFT_05933: H281DRAFT_05933 - L-glutaminase, at 71,024 to 71,938 _05933 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.951 kb on + strandat 69.003 kb on - strandat 69.034 kb on + strandat 69.213 kb on + strandat 69.214 kb on - strandat 69.545 kb on - strand, within H281DRAFT_05932at 69.872 kb on + strand, within H281DRAFT_05932at 69.872 kb on + strand, within H281DRAFT_05932at 69.872 kb on + strand, within H281DRAFT_05932at 69.872 kb on + strand, within H281DRAFT_05932at 69.873 kb on - strand, within H281DRAFT_05932at 69.873 kb on - strand, within H281DRAFT_05932at 69.874 kb on + strand, within H281DRAFT_05932at 69.874 kb on + strand, within H281DRAFT_05932at 69.874 kb on + strand, within H281DRAFT_05932at 69.874 kb on + strand, within H281DRAFT_05932at 69.875 kb on - strand, within H281DRAFT_05932at 69.893 kb on + strand, within H281DRAFT_05932at 69.894 kb on - strand, within H281DRAFT_05932at 70.009 kb on + strand, within H281DRAFT_05932at 70.010 kb on - strand, within H281DRAFT_05932at 70.010 kb on - strand, within H281DRAFT_05932at 70.010 kb on - strand, within H281DRAFT_05932at 70.220 kb on + strand, within H281DRAFT_05932at 70.220 kb on + strand, within H281DRAFT_05932at 70.424 kb on + strand, within H281DRAFT_05932at 70.425 kb on - strand, within H281DRAFT_05932at 70.425 kb on - strand, within H281DRAFT_05932at 70.426 kb on + strand, within H281DRAFT_05932at 70.741 kb on + strand, within H281DRAFT_05932at 70.786 kb on + strandat 70.826 kb on - strandat 70.826 kb on - strandat 71.031 kb on - strandat 71.031 kb on - strandat 71.031 kb on - strandat 71.468 kb on + strand, within H281DRAFT_05933at 71.585 kb on + strand, within H281DRAFT_05933at 71.585 kb on + strand, within H281DRAFT_05933at 71.585 kb on + strand, within H281DRAFT_05933at 71.586 kb on - strand, within H281DRAFT_05933at 71.586 kb on - strand, within H281DRAFT_05933at 71.742 kb on - strand, within H281DRAFT_05933at 71.742 kb on - strand, within H281DRAFT_05933

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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68,951 + -0.0
69,003 - -0.4
69,034 + +0.4
69,213 + -0.1
69,214 - -3.0
69,545 - H281DRAFT_05932 0.13 -1.5
69,872 + H281DRAFT_05932 0.34 -1.3
69,872 + H281DRAFT_05932 0.34 -0.8
69,872 + H281DRAFT_05932 0.34 -0.0
69,872 + H281DRAFT_05932 0.34 +1.4
69,873 - H281DRAFT_05932 0.34 -0.7
69,873 - H281DRAFT_05932 0.34 -0.0
69,874 + H281DRAFT_05932 0.34 +2.4
69,874 + H281DRAFT_05932 0.34 -1.2
69,874 + H281DRAFT_05932 0.34 +0.8
69,874 + H281DRAFT_05932 0.34 +0.2
69,875 - H281DRAFT_05932 0.34 -0.5
69,893 + H281DRAFT_05932 0.35 -0.2
69,894 - H281DRAFT_05932 0.35 +0.4
70,009 + H281DRAFT_05932 0.43 +0.2
70,010 - H281DRAFT_05932 0.43 -2.1
70,010 - H281DRAFT_05932 0.43 -0.8
70,010 - H281DRAFT_05932 0.43 +0.6
70,220 + H281DRAFT_05932 0.56 +0.9
70,220 + H281DRAFT_05932 0.56 -0.2
70,424 + H281DRAFT_05932 0.69 +0.1
70,425 - H281DRAFT_05932 0.69 -0.1
70,425 - H281DRAFT_05932 0.69 -0.1
70,426 + H281DRAFT_05932 0.69 +0.5
70,741 + H281DRAFT_05932 0.89 +1.3
70,786 + +0.6
70,826 - -0.4
70,826 - -1.2
71,031 - -0.3
71,031 - -0.6
71,031 - +0.8
71,468 + H281DRAFT_05933 0.49 -2.3
71,585 + H281DRAFT_05933 0.61 -0.2
71,585 + H281DRAFT_05933 0.61 +0.2
71,585 + H281DRAFT_05933 0.61 +0.1
71,586 - H281DRAFT_05933 0.61 +0.6
71,586 - H281DRAFT_05933 0.61 -1.1
71,742 - H281DRAFT_05933 0.78 -2.2
71,742 - H281DRAFT_05933 0.78 -1.5

Or see this region's nucleotide sequence