Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05675 and H281DRAFT_05676 are separated by 31 nucleotides H281DRAFT_05676 and H281DRAFT_05677 are separated by 796 nucleotides
H281DRAFT_05675: H281DRAFT_05675 - Methylase of polypeptide chain release factors, at 91,105 to 92,232
_05675
H281DRAFT_05676: H281DRAFT_05676 - hypothetical protein, at 92,264 to 93,559
_05676
H281DRAFT_05677: H281DRAFT_05677 - Protein of unknown function (DUF1059), at 94,356 to 94,565
_05677
Position (kb)
92
93
94 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 91.444 kb on + strand, within H281DRAFT_05675 at 91.445 kb on - strand, within H281DRAFT_05675 at 91.498 kb on + strand, within H281DRAFT_05675 at 91.499 kb on - strand, within H281DRAFT_05675 at 91.499 kb on - strand, within H281DRAFT_05675 at 91.622 kb on - strand, within H281DRAFT_05675 at 91.622 kb on - strand, within H281DRAFT_05675 at 91.654 kb on + strand, within H281DRAFT_05675 at 91.654 kb on + strand, within H281DRAFT_05675 at 91.655 kb on - strand, within H281DRAFT_05675 at 91.655 kb on - strand at 91.831 kb on + strand, within H281DRAFT_05675 at 91.952 kb on - strand, within H281DRAFT_05675 at 92.108 kb on + strand, within H281DRAFT_05675 at 92.108 kb on + strand, within H281DRAFT_05675 at 92.108 kb on + strand, within H281DRAFT_05675 at 92.109 kb on - strand, within H281DRAFT_05675 at 92.109 kb on - strand, within H281DRAFT_05675 at 92.109 kb on - strand, within H281DRAFT_05675 at 92.109 kb on - strand, within H281DRAFT_05675 at 92.109 kb on - strand, within H281DRAFT_05675 at 92.109 kb on - strand, within H281DRAFT_05675 at 92.131 kb on - strand at 92.154 kb on + strand at 92.199 kb on + strand at 92.349 kb on + strand at 92.350 kb on - strand at 92.518 kb on + strand, within H281DRAFT_05676 at 92.565 kb on - strand, within H281DRAFT_05676 at 92.576 kb on + strand, within H281DRAFT_05676 at 92.577 kb on - strand at 92.704 kb on + strand, within H281DRAFT_05676 at 92.760 kb on + strand at 92.760 kb on + strand, within H281DRAFT_05676 at 92.761 kb on - strand, within H281DRAFT_05676 at 92.761 kb on - strand, within H281DRAFT_05676 at 92.892 kb on + strand, within H281DRAFT_05676 at 92.893 kb on - strand, within H281DRAFT_05676 at 93.039 kb on + strand, within H281DRAFT_05676 at 93.039 kb on + strand, within H281DRAFT_05676 at 93.039 kb on + strand, within H281DRAFT_05676 at 93.040 kb on - strand at 93.040 kb on - strand, within H281DRAFT_05676 at 93.074 kb on + strand, within H281DRAFT_05676 at 93.075 kb on - strand, within H281DRAFT_05676 at 93.075 kb on - strand, within H281DRAFT_05676 at 93.075 kb on - strand, within H281DRAFT_05676 at 93.075 kb on - strand, within H281DRAFT_05676 at 93.075 kb on - strand, within H281DRAFT_05676 at 93.082 kb on + strand, within H281DRAFT_05676 at 93.082 kb on + strand, within H281DRAFT_05676 at 93.467 kb on + strand at 93.468 kb on - strand at 93.468 kb on - strand at 93.603 kb on + strand at 94.114 kb on + strand at 94.114 kb on + strand at 94.115 kb on - strand at 94.244 kb on - strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.332 kb on + strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.333 kb on - strand at 94.336 kb on + strand at 94.337 kb on - strand at 94.368 kb on + strand at 94.369 kb on - strand at 94.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 91,444 + H281DRAFT_05675 0.30 +0.4 91,445 - H281DRAFT_05675 0.30 +0.4 91,498 + H281DRAFT_05675 0.35 +1.3 91,499 - H281DRAFT_05675 0.35 -2.3 91,499 - H281DRAFT_05675 0.35 -0.0 91,622 - H281DRAFT_05675 0.46 +0.2 91,622 - H281DRAFT_05675 0.46 +0.5 91,654 + H281DRAFT_05675 0.49 +0.5 91,654 + H281DRAFT_05675 0.49 -0.4 91,655 - H281DRAFT_05675 0.49 -0.6 91,655 - +0.1 91,831 + H281DRAFT_05675 0.64 -1.1 91,952 - H281DRAFT_05675 0.75 +0.7 92,108 + H281DRAFT_05675 0.89 +0.1 92,108 + H281DRAFT_05675 0.89 +0.3 92,108 + H281DRAFT_05675 0.89 -0.1 92,109 - H281DRAFT_05675 0.89 -1.4 92,109 - H281DRAFT_05675 0.89 -0.3 92,109 - H281DRAFT_05675 0.89 +1.6 92,109 - H281DRAFT_05675 0.89 +0.6 92,109 - H281DRAFT_05675 0.89 -0.4 92,109 - H281DRAFT_05675 0.89 -1.5 92,131 - +0.3 92,154 + +0.9 92,199 + -0.0 92,349 + +0.2 92,350 - +0.8 92,518 + H281DRAFT_05676 0.20 -3.0 92,565 - H281DRAFT_05676 0.23 +0.2 92,576 + H281DRAFT_05676 0.24 -0.7 92,577 - -1.1 92,704 + H281DRAFT_05676 0.34 +0.2 92,760 + +0.1 92,760 + H281DRAFT_05676 0.38 +1.9 92,761 - H281DRAFT_05676 0.38 +0.3 92,761 - H281DRAFT_05676 0.38 -1.4 92,892 + H281DRAFT_05676 0.48 -0.7 92,893 - H281DRAFT_05676 0.49 +1.1 93,039 + H281DRAFT_05676 0.60 -2.8 93,039 + H281DRAFT_05676 0.60 -1.1 93,039 + H281DRAFT_05676 0.60 -1.9 93,040 - -0.1 93,040 - H281DRAFT_05676 0.60 +0.2 93,074 + H281DRAFT_05676 0.62 +0.4 93,075 - H281DRAFT_05676 0.63 +0.9 93,075 - H281DRAFT_05676 0.63 +1.0 93,075 - H281DRAFT_05676 0.63 -1.8 93,075 - H281DRAFT_05676 0.63 -1.2 93,075 - H281DRAFT_05676 0.63 +0.6 93,082 + H281DRAFT_05676 0.63 -0.3 93,082 + H281DRAFT_05676 0.63 +0.5 93,467 + +0.5 93,468 - +1.2 93,468 - -0.3 93,603 + +0.4 94,114 + -0.1 94,114 + -2.4 94,115 - +0.9 94,244 - +0.6 94,332 + +0.2 94,332 + -0.2 94,332 + -1.3 94,332 + -0.8 94,332 + -0.6 94,332 + +0.5 94,332 + +0.5 94,332 + +0.8 94,332 + +1.0 94,332 + -0.2 94,333 - -0.3 94,333 - -0.3 94,333 - +0.1 94,333 - +0.6 94,333 - +0.1 94,333 - +1.0 94,333 - +0.8 94,333 - +0.2 94,333 - +0.8 94,336 + -0.1 94,337 - -0.6 94,368 + +1.2 94,369 - +3.8 94,369 - -1.0
Or see this region's nucleotide sequence