Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05470

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05469 and H281DRAFT_05470 are separated by 186 nucleotidesH281DRAFT_05470 and H281DRAFT_05471 are separated by 994 nucleotides H281DRAFT_05469: H281DRAFT_05469 - transcriptional regulator, IclR family, at 49,090 to 49,830 _05469 H281DRAFT_05470: H281DRAFT_05470 - hypothetical protein, at 50,017 to 50,346 _05470 H281DRAFT_05471: H281DRAFT_05471 - pyruvate dehydrogenase (quinone), at 51,341 to 53,137 _05471 Position (kb) 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 49.028 kb on + strandat 49.028 kb on + strandat 49.029 kb on - strandat 49.086 kb on + strandat 49.086 kb on + strandat 49.127 kb on + strandat 49.208 kb on - strand, within H281DRAFT_05469at 49.208 kb on - strand, within H281DRAFT_05469at 49.235 kb on + strandat 49.295 kb on - strand, within H281DRAFT_05469at 49.719 kb on - strand, within H281DRAFT_05469at 49.734 kb on - strand, within H281DRAFT_05469at 49.812 kb on - strandat 49.986 kb on - strandat 50.012 kb on - strandat 50.012 kb on - strandat 50.012 kb on - strandat 50.012 kb on - strandat 50.012 kb on - strandat 50.245 kb on + strand, within H281DRAFT_05470at 50.342 kb on + strandat 50.343 kb on - strandat 50.343 kb on - strandat 50.516 kb on + strandat 50.520 kb on + strandat 50.521 kb on - strandat 50.697 kb on + strandat 50.819 kb on - strandat 51.054 kb on + strandat 51.055 kb on - strandat 51.063 kb on + strandat 51.126 kb on - strandat 51.128 kb on + strandat 51.129 kb on - strandat 51.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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49,028 + +1.3
49,028 + -1.9
49,029 - -0.1
49,086 + -0.7
49,086 + +0.9
49,127 + -2.1
49,208 - H281DRAFT_05469 0.16 -1.4
49,208 - H281DRAFT_05469 0.16 +0.8
49,235 + +0.7
49,295 - H281DRAFT_05469 0.28 -1.1
49,719 - H281DRAFT_05469 0.85 -2.0
49,734 - H281DRAFT_05469 0.87 -3.0
49,812 - +0.1
49,986 - +0.1
50,012 - +0.1
50,012 - -1.0
50,012 - -1.6
50,012 - +0.3
50,012 - -2.1
50,245 + H281DRAFT_05470 0.69 +1.6
50,342 + -1.6
50,343 - -0.9
50,343 - +0.4
50,516 + -0.3
50,520 + -1.2
50,521 - -0.2
50,697 + +0.5
50,819 - +0.8
51,054 + +0.3
51,055 - -0.9
51,063 + +0.9
51,126 - -2.2
51,128 + +0.8
51,129 - +0.3
51,254 + +1.9

Or see this region's nucleotide sequence