Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05287 and H281DRAFT_05288 are separated by 262 nucleotides H281DRAFT_05288 and H281DRAFT_05289 are separated by 28 nucleotides H281DRAFT_05289 and H281DRAFT_05290 are separated by 331 nucleotides
H281DRAFT_05287: H281DRAFT_05287 - porin, OprB family, at 29,560 to 31,119
_05287
H281DRAFT_05288: H281DRAFT_05288 - hypothetical protein, at 31,382 to 32,065
_05288
H281DRAFT_05289: H281DRAFT_05289 - N-hydroxyarylamine O-acetyltransferase, at 32,094 to 32,930
_05289
H281DRAFT_05290: H281DRAFT_05290 - amino acid ABC transporter substrate-binding protein, PAAT family, at 33,262 to 34,122
_05290
Position (kb) 32
33 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.131 kb on + strand at 31.132 kb on - strand at 31.246 kb on + strand at 31.246 kb on + strand at 31.286 kb on + strand at 31.367 kb on + strand at 31.377 kb on + strand at 31.378 kb on - strand at 31.378 kb on - strand at 31.381 kb on + strand at 31.381 kb on + strand at 31.547 kb on + strand, within H281DRAFT_05288 at 31.548 kb on - strand, within H281DRAFT_05288 at 31.935 kb on - strand, within H281DRAFT_05288 at 31.935 kb on - strand, within H281DRAFT_05288 at 31.995 kb on + strand, within H281DRAFT_05288 at 32.094 kb on - strand at 32.335 kb on + strand, within H281DRAFT_05289 at 32.418 kb on - strand, within H281DRAFT_05289 at 32.796 kb on - strand, within H281DRAFT_05289 at 32.929 kb on - strand at 32.971 kb on - strand at 33.109 kb on - strand at 33.751 kb on - strand, within H281DRAFT_05290 at 33.751 kb on - strand, within H281DRAFT_05290 at 33.751 kb on - strand, within H281DRAFT_05290 at 33.782 kb on - strand, within H281DRAFT_05290 at 33.783 kb on + strand, within H281DRAFT_05290 at 33.784 kb on - strand, within H281DRAFT_05290 at 33.833 kb on - strand, within H281DRAFT_05290 at 33.904 kb on + strand, within H281DRAFT_05290 at 33.905 kb on - strand, within H281DRAFT_05290
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 31,131 + +0.3 31,132 - -0.7 31,246 + -0.4 31,246 + +1.4 31,286 + -0.4 31,367 + -1.2 31,377 + -0.2 31,378 - +1.4 31,378 - -1.1 31,381 + +0.4 31,381 + +0.7 31,547 + H281DRAFT_05288 0.24 -0.2 31,548 - H281DRAFT_05288 0.24 +0.1 31,935 - H281DRAFT_05288 0.81 -0.6 31,935 - H281DRAFT_05288 0.81 +2.2 31,995 + H281DRAFT_05288 0.90 +0.4 32,094 - -0.1 32,335 + H281DRAFT_05289 0.29 +1.1 32,418 - H281DRAFT_05289 0.39 +0.6 32,796 - H281DRAFT_05289 0.84 +1.2 32,929 - -0.3 32,971 - +0.2 33,109 - -0.2 33,751 - H281DRAFT_05290 0.57 -0.9 33,751 - H281DRAFT_05290 0.57 -1.2 33,751 - H281DRAFT_05290 0.57 -2.2 33,782 - H281DRAFT_05290 0.60 -1.4 33,783 + H281DRAFT_05290 0.61 -2.6 33,784 - H281DRAFT_05290 0.61 +0.3 33,833 - H281DRAFT_05290 0.66 -1.7 33,904 + H281DRAFT_05290 0.75 +2.4 33,905 - H281DRAFT_05290 0.75 -0.7
Or see this region's nucleotide sequence