Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05273

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05272 and H281DRAFT_05273 are separated by 103 nucleotidesH281DRAFT_05273 and H281DRAFT_05274 are separated by 66 nucleotides H281DRAFT_05272: H281DRAFT_05272 - monosaccharide ABC transporter membrane protein, CUT2 family, at 14,510 to 15,607 _05272 H281DRAFT_05273: H281DRAFT_05273 - Predicted arabinose efflux permease, MFS family, at 15,711 to 17,012 _05273 H281DRAFT_05274: H281DRAFT_05274 - Uncharacterized protein YcsI, UPF0317 family, at 17,079 to 17,858 _05274 Position (kb) 15 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1at 15.180 kb on + strand, within H281DRAFT_05272at 15.230 kb on + strand, within H281DRAFT_05272at 15.330 kb on - strand, within H281DRAFT_05272at 15.749 kb on + strandat 16.007 kb on + strand, within H281DRAFT_05273at 16.103 kb on - strand, within H281DRAFT_05273at 17.080 kb on + strandat 17.170 kb on - strand, within H281DRAFT_05274at 17.446 kb on - strand, within H281DRAFT_05274at 17.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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15,180 + H281DRAFT_05272 0.61 -0.5
15,230 + H281DRAFT_05272 0.66 +0.3
15,330 - H281DRAFT_05272 0.75 -0.9
15,749 + +0.4
16,007 + H281DRAFT_05273 0.23 -3.5
16,103 - H281DRAFT_05273 0.30 -2.6
17,080 + +1.5
17,170 - H281DRAFT_05274 0.12 -1.4
17,446 - H281DRAFT_05274 0.47 -0.1
17,851 + +0.1

Or see this region's nucleotide sequence