Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05234

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05233 and H281DRAFT_05234 overlap by 4 nucleotidesH281DRAFT_05234 and H281DRAFT_05235 are separated by 164 nucleotides H281DRAFT_05233: H281DRAFT_05233 - hypothetical protein, at 198,887 to 200,158 _05233 H281DRAFT_05234: H281DRAFT_05234 - Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation, at 200,155 to 201,870 _05234 H281DRAFT_05235: H281DRAFT_05235 - hypothetical protein, at 202,035 to 203,072 _05235 Position (kb) 200 201 202Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 199.372 kb on + strand, within H281DRAFT_05233at 199.733 kb on + strand, within H281DRAFT_05233at 199.901 kb on + strand, within H281DRAFT_05233at 199.994 kb on + strand, within H281DRAFT_05233at 199.995 kb on - strand, within H281DRAFT_05233at 200.346 kb on + strand, within H281DRAFT_05234at 200.413 kb on + strand, within H281DRAFT_05234at 200.424 kb on + strand, within H281DRAFT_05234at 200.446 kb on + strand, within H281DRAFT_05234at 200.446 kb on + strand, within H281DRAFT_05234at 200.462 kb on - strand, within H281DRAFT_05234at 200.509 kb on + strand, within H281DRAFT_05234at 200.510 kb on - strandat 200.612 kb on - strand, within H281DRAFT_05234at 200.647 kb on + strand, within H281DRAFT_05234at 200.648 kb on - strand, within H281DRAFT_05234at 200.712 kb on + strand, within H281DRAFT_05234at 200.712 kb on + strand, within H281DRAFT_05234at 200.734 kb on + strand, within H281DRAFT_05234at 200.734 kb on + strand, within H281DRAFT_05234at 200.735 kb on - strand, within H281DRAFT_05234at 200.735 kb on - strand, within H281DRAFT_05234at 200.777 kb on - strand, within H281DRAFT_05234at 200.798 kb on - strand, within H281DRAFT_05234at 200.798 kb on - strand, within H281DRAFT_05234at 200.798 kb on - strand, within H281DRAFT_05234at 200.876 kb on - strand, within H281DRAFT_05234at 200.876 kb on - strand, within H281DRAFT_05234at 200.891 kb on - strand, within H281DRAFT_05234at 200.891 kb on - strand, within H281DRAFT_05234at 200.892 kb on + strand, within H281DRAFT_05234at 200.954 kb on - strand, within H281DRAFT_05234at 201.149 kb on - strand, within H281DRAFT_05234at 201.203 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.224 kb on - strand, within H281DRAFT_05234at 201.313 kb on + strand, within H281DRAFT_05234at 201.313 kb on + strand, within H281DRAFT_05234at 201.314 kb on - strand, within H281DRAFT_05234at 201.316 kb on + strand, within H281DRAFT_05234at 201.317 kb on - strand, within H281DRAFT_05234at 201.324 kb on + strand, within H281DRAFT_05234at 201.363 kb on + strand, within H281DRAFT_05234at 201.549 kb on + strand, within H281DRAFT_05234at 201.601 kb on + strand, within H281DRAFT_05234at 201.602 kb on - strand, within H281DRAFT_05234at 201.602 kb on - strand, within H281DRAFT_05234at 201.602 kb on - strand, within H281DRAFT_05234at 201.617 kb on + strand, within H281DRAFT_05234at 201.628 kb on + strand, within H281DRAFT_05234at 201.628 kb on + strand, within H281DRAFT_05234at 201.675 kb on + strand, within H281DRAFT_05234at 201.675 kb on + strand, within H281DRAFT_05234at 201.676 kb on - strand, within H281DRAFT_05234at 201.676 kb on - strand, within H281DRAFT_05234at 201.676 kb on - strand, within H281DRAFT_05234at 201.832 kb on + strandat 201.844 kb on + strandat 202.037 kb on - strandat 202.275 kb on + strand, within H281DRAFT_05235at 202.275 kb on + strand, within H281DRAFT_05235at 202.275 kb on + strand, within H281DRAFT_05235at 202.276 kb on - strand, within H281DRAFT_05235at 202.277 kb on + strand, within H281DRAFT_05235at 202.277 kb on + strand, within H281DRAFT_05235at 202.277 kb on + strand, within H281DRAFT_05235at 202.278 kb on - strand, within H281DRAFT_05235at 202.278 kb on - strand, within H281DRAFT_05235at 202.375 kb on + strand, within H281DRAFT_05235at 202.384 kb on + strand, within H281DRAFT_05235at 202.385 kb on - strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.459 kb on - strand, within H281DRAFT_05235at 202.544 kb on + strand, within H281DRAFT_05235at 202.544 kb on + strandat 202.551 kb on - strand, within H281DRAFT_05235at 202.640 kb on - strandat 202.798 kb on - strand, within H281DRAFT_05235at 202.842 kb on + strand, within H281DRAFT_05235

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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199,372 + H281DRAFT_05233 0.38 -0.8
199,733 + H281DRAFT_05233 0.67 +0.4
199,901 + H281DRAFT_05233 0.80 -2.2
199,994 + H281DRAFT_05233 0.87 -0.7
199,995 - H281DRAFT_05233 0.87 -1.5
200,346 + H281DRAFT_05234 0.11 +0.4
200,413 + H281DRAFT_05234 0.15 -0.3
200,424 + H281DRAFT_05234 0.16 -0.4
200,446 + H281DRAFT_05234 0.17 +0.8
200,446 + H281DRAFT_05234 0.17 -0.6
200,462 - H281DRAFT_05234 0.18 +0.1
200,509 + H281DRAFT_05234 0.21 -0.2
200,510 - -1.4
200,612 - H281DRAFT_05234 0.27 +0.3
200,647 + H281DRAFT_05234 0.29 -0.6
200,648 - H281DRAFT_05234 0.29 +0.2
200,712 + H281DRAFT_05234 0.32 -1.6
200,712 + H281DRAFT_05234 0.32 +0.3
200,734 + H281DRAFT_05234 0.34 +0.6
200,734 + H281DRAFT_05234 0.34 -0.8
200,735 - H281DRAFT_05234 0.34 -0.8
200,735 - H281DRAFT_05234 0.34 -1.7
200,777 - H281DRAFT_05234 0.36 -0.2
200,798 - H281DRAFT_05234 0.37 +0.9
200,798 - H281DRAFT_05234 0.37 -0.8
200,798 - H281DRAFT_05234 0.37 -2.5
200,876 - H281DRAFT_05234 0.42 +0.0
200,876 - H281DRAFT_05234 0.42 +0.4
200,891 - H281DRAFT_05234 0.43 -1.4
200,891 - H281DRAFT_05234 0.43 -0.3
200,892 + H281DRAFT_05234 0.43 +0.4
200,954 - H281DRAFT_05234 0.47 +0.3
201,149 - H281DRAFT_05234 0.58 +0.0
201,203 - H281DRAFT_05234 0.61 -0.3
201,224 - H281DRAFT_05234 0.62 -2.5
201,224 - H281DRAFT_05234 0.62 -0.7
201,224 - H281DRAFT_05234 0.62 +0.1
201,224 - H281DRAFT_05234 0.62 -0.6
201,313 + H281DRAFT_05234 0.67 -0.2
201,313 + H281DRAFT_05234 0.67 +0.2
201,314 - H281DRAFT_05234 0.68 -0.5
201,316 + H281DRAFT_05234 0.68 -2.4
201,317 - H281DRAFT_05234 0.68 -1.4
201,324 + H281DRAFT_05234 0.68 +0.2
201,363 + H281DRAFT_05234 0.70 -0.3
201,549 + H281DRAFT_05234 0.81 -0.1
201,601 + H281DRAFT_05234 0.84 +0.8
201,602 - H281DRAFT_05234 0.84 -1.7
201,602 - H281DRAFT_05234 0.84 -0.6
201,602 - H281DRAFT_05234 0.84 +1.1
201,617 + H281DRAFT_05234 0.85 -0.3
201,628 + H281DRAFT_05234 0.86 +0.3
201,628 + H281DRAFT_05234 0.86 +1.0
201,675 + H281DRAFT_05234 0.89 -0.8
201,675 + H281DRAFT_05234 0.89 -0.7
201,676 - H281DRAFT_05234 0.89 +0.4
201,676 - H281DRAFT_05234 0.89 -1.1
201,676 - H281DRAFT_05234 0.89 +0.5
201,832 + -1.1
201,844 + +0.9
202,037 - -4.5
202,275 + H281DRAFT_05235 0.23 +1.4
202,275 + H281DRAFT_05235 0.23 +0.1
202,275 + H281DRAFT_05235 0.23 +0.5
202,276 - H281DRAFT_05235 0.23 +0.8
202,277 + H281DRAFT_05235 0.23 +0.1
202,277 + H281DRAFT_05235 0.23 -0.1
202,277 + H281DRAFT_05235 0.23 +0.1
202,278 - H281DRAFT_05235 0.23 -0.9
202,278 - H281DRAFT_05235 0.23 +0.7
202,375 + H281DRAFT_05235 0.33 -1.0
202,384 + H281DRAFT_05235 0.34 +1.5
202,385 - H281DRAFT_05235 0.34 +0.2
202,458 + H281DRAFT_05235 0.41 +1.3
202,458 + H281DRAFT_05235 0.41 -0.4
202,458 + H281DRAFT_05235 0.41 -1.2
202,459 - H281DRAFT_05235 0.41 -2.5
202,544 + H281DRAFT_05235 0.49 +0.5
202,544 + -0.2
202,551 - H281DRAFT_05235 0.50 +0.4
202,640 - +1.5
202,798 - H281DRAFT_05235 0.74 -1.9
202,842 + H281DRAFT_05235 0.78 +0.8

Or see this region's nucleotide sequence