Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05163 and H281DRAFT_05164 are separated by 537 nucleotides H281DRAFT_05164 and H281DRAFT_05165 are separated by 69 nucleotides
H281DRAFT_05163: H281DRAFT_05163 - 5-hydroxyisourate hydrolase, at 116,900 to 117,253
_05163
H281DRAFT_05164: H281DRAFT_05164 - Cytosine/adenosine deaminase, at 117,791 to 119,188
_05164
H281DRAFT_05165: H281DRAFT_05165 - transcriptional regulator, LysR family, at 119,258 to 120,190
_05165
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 117.305 kb on + strand at 117.342 kb on - strand at 117.387 kb on - strand at 117.387 kb on - strand at 117.387 kb on - strand at 117.429 kb on + strand at 117.430 kb on - strand at 117.430 kb on - strand at 117.497 kb on + strand at 117.497 kb on + strand at 117.539 kb on + strand at 117.539 kb on + strand at 117.539 kb on + strand at 117.540 kb on - strand at 117.680 kb on + strand at 117.680 kb on + strand at 117.681 kb on - strand at 117.911 kb on + strand at 117.911 kb on + strand at 117.911 kb on + strand at 117.911 kb on + strand at 117.912 kb on - strand at 117.912 kb on - strand at 117.912 kb on - strand at 118.037 kb on + strand, within H281DRAFT_05164 at 118.037 kb on + strand, within H281DRAFT_05164 at 118.038 kb on - strand, within H281DRAFT_05164 at 118.038 kb on - strand, within H281DRAFT_05164 at 118.107 kb on - strand, within H281DRAFT_05164 at 118.211 kb on + strand, within H281DRAFT_05164 at 118.211 kb on + strand, within H281DRAFT_05164 at 118.212 kb on - strand, within H281DRAFT_05164 at 118.212 kb on - strand, within H281DRAFT_05164 at 118.212 kb on - strand, within H281DRAFT_05164 at 118.213 kb on + strand, within H281DRAFT_05164 at 118.214 kb on - strand, within H281DRAFT_05164 at 118.214 kb on - strand, within H281DRAFT_05164 at 118.214 kb on - strand, within H281DRAFT_05164 at 118.214 kb on - strand, within H281DRAFT_05164 at 118.214 kb on - strand, within H281DRAFT_05164 at 118.214 kb on - strand, within H281DRAFT_05164 at 118.218 kb on - strand, within H281DRAFT_05164 at 118.218 kb on - strand, within H281DRAFT_05164 at 118.362 kb on + strand, within H281DRAFT_05164 at 118.362 kb on + strand, within H281DRAFT_05164 at 118.363 kb on - strand, within H281DRAFT_05164 at 118.394 kb on + strand, within H281DRAFT_05164 at 118.395 kb on - strand, within H281DRAFT_05164 at 118.554 kb on - strand, within H281DRAFT_05164 at 118.555 kb on + strand, within H281DRAFT_05164 at 118.556 kb on - strand, within H281DRAFT_05164 at 118.715 kb on - strand, within H281DRAFT_05164 at 118.845 kb on + strand, within H281DRAFT_05164 at 119.071 kb on + strand at 119.172 kb on - strand at 119.245 kb on - strand at 119.245 kb on - strand at 119.355 kb on + strand, within H281DRAFT_05165 at 119.356 kb on - strand, within H281DRAFT_05165 at 119.419 kb on - strand, within H281DRAFT_05165 at 119.422 kb on - strand, within H281DRAFT_05165 at 119.494 kb on - strand, within H281DRAFT_05165 at 119.575 kb on - strand, within H281DRAFT_05165 at 119.621 kb on - strand, within H281DRAFT_05165 at 120.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 117,305 + +0.2 117,342 - +0.1 117,387 - +0.8 117,387 - -0.6 117,387 - +0.3 117,429 + +0.4 117,430 - -0.3 117,430 - +0.8 117,497 + -1.7 117,497 + +0.8 117,539 + -2.0 117,539 + -1.7 117,539 + -0.8 117,540 - +0.5 117,680 + -0.6 117,680 + -0.1 117,681 - +0.6 117,911 + +0.5 117,911 + -0.4 117,911 + +0.3 117,911 + +0.2 117,912 - -1.1 117,912 - +1.0 117,912 - +0.2 118,037 + H281DRAFT_05164 0.18 -0.2 118,037 + H281DRAFT_05164 0.18 -0.8 118,038 - H281DRAFT_05164 0.18 +1.1 118,038 - H281DRAFT_05164 0.18 -1.6 118,107 - H281DRAFT_05164 0.23 +0.1 118,211 + H281DRAFT_05164 0.30 +0.6 118,211 + H281DRAFT_05164 0.30 -2.7 118,212 - H281DRAFT_05164 0.30 -0.1 118,212 - H281DRAFT_05164 0.30 -0.0 118,212 - H281DRAFT_05164 0.30 +0.7 118,213 + H281DRAFT_05164 0.30 +0.6 118,214 - H281DRAFT_05164 0.30 -0.4 118,214 - H281DRAFT_05164 0.30 +0.8 118,214 - H281DRAFT_05164 0.30 +0.2 118,214 - H281DRAFT_05164 0.30 +0.6 118,214 - H281DRAFT_05164 0.30 -0.0 118,214 - H281DRAFT_05164 0.30 -0.8 118,218 - H281DRAFT_05164 0.31 -1.1 118,218 - H281DRAFT_05164 0.31 +0.2 118,362 + H281DRAFT_05164 0.41 -0.3 118,362 + H281DRAFT_05164 0.41 -3.0 118,363 - H281DRAFT_05164 0.41 -0.9 118,394 + H281DRAFT_05164 0.43 +1.8 118,395 - H281DRAFT_05164 0.43 -0.3 118,554 - H281DRAFT_05164 0.55 +0.9 118,555 + H281DRAFT_05164 0.55 +0.3 118,556 - H281DRAFT_05164 0.55 -3.1 118,715 - H281DRAFT_05164 0.66 -0.3 118,845 + H281DRAFT_05164 0.75 +2.1 119,071 + -0.7 119,172 - +1.1 119,245 - +0.9 119,245 - -1.5 119,355 + H281DRAFT_05165 0.10 +0.2 119,356 - H281DRAFT_05165 0.11 +0.3 119,419 - H281DRAFT_05165 0.17 -0.3 119,422 - H281DRAFT_05165 0.18 +0.4 119,494 - H281DRAFT_05165 0.25 +0.0 119,575 - H281DRAFT_05165 0.34 -0.8 119,621 - H281DRAFT_05165 0.39 -0.2 120,164 - +2.4
Or see this region's nucleotide sequence