Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05160

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05158 and H281DRAFT_05159 overlap by 4 nucleotidesH281DRAFT_05159 and H281DRAFT_05160 are separated by 141 nucleotidesH281DRAFT_05160 and H281DRAFT_05161 overlap by 4 nucleotidesH281DRAFT_05161 and H281DRAFT_05162 are separated by 368 nucleotides H281DRAFT_05158: H281DRAFT_05158 - putative urate catabolism protein, at 112,021 to 112,971 _05158 H281DRAFT_05159: H281DRAFT_05159 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 112,968 to 113,489 _05159 H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644 _05160 H281DRAFT_05161: H281DRAFT_05161 - ureidoglycolate lyase, at 114,641 to 115,153 _05161 H281DRAFT_05162: H281DRAFT_05162 - Uncharacterized membrane protein, at 115,522 to 116,715 _05162 Position (kb) 113 114 115Strain fitness (log2 ratio) -1 0 1at 112.736 kb on - strandat 112.762 kb on + strand, within H281DRAFT_05158at 112.867 kb on - strand, within H281DRAFT_05158at 113.129 kb on + strand, within H281DRAFT_05159at 113.129 kb on + strandat 113.406 kb on - strand, within H281DRAFT_05159at 113.423 kb on - strand, within H281DRAFT_05159at 113.562 kb on - strandat 113.796 kb on + strand, within H281DRAFT_05160at 114.026 kb on + strand, within H281DRAFT_05160at 114.051 kb on + strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strandat 114.136 kb on - strand, within H281DRAFT_05160at 114.231 kb on - strand, within H281DRAFT_05160at 114.409 kb on - strand, within H281DRAFT_05160at 114.409 kb on - strand, within H281DRAFT_05160at 114.438 kb on + strand, within H281DRAFT_05160at 114.439 kb on - strand, within H281DRAFT_05160at 114.535 kb on - strand, within H281DRAFT_05160at 115.275 kb on - strandat 115.275 kb on - strandat 115.280 kb on + strandat 115.426 kb on + strandat 115.427 kb on - strandat 115.492 kb on - strandat 115.631 kb on + strandat 115.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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112,736 - +1.1
112,762 + H281DRAFT_05158 0.78 +1.7
112,867 - H281DRAFT_05158 0.89 -0.1
113,129 + H281DRAFT_05159 0.31 -0.4
113,129 + -0.8
113,406 - H281DRAFT_05159 0.84 -0.9
113,423 - H281DRAFT_05159 0.87 +0.2
113,562 - -0.1
113,796 + H281DRAFT_05160 0.16 +0.6
114,026 + H281DRAFT_05160 0.39 +0.6
114,051 + H281DRAFT_05160 0.41 +1.3
114,081 - H281DRAFT_05160 0.44 +0.6
114,081 - H281DRAFT_05160 0.44 +0.1
114,081 - H281DRAFT_05160 0.44 +0.3
114,081 - +0.9
114,136 - H281DRAFT_05160 0.50 +0.7
114,231 - H281DRAFT_05160 0.59 +0.2
114,409 - H281DRAFT_05160 0.77 +0.4
114,409 - H281DRAFT_05160 0.77 +0.3
114,438 + H281DRAFT_05160 0.80 +0.3
114,439 - H281DRAFT_05160 0.80 +0.7
114,535 - H281DRAFT_05160 0.89 +1.0
115,275 - +0.0
115,275 - -0.8
115,280 + +0.7
115,426 + +0.1
115,427 - -0.1
115,492 - +0.9
115,631 + +0.7
115,632 - +1.5

Or see this region's nucleotide sequence