Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05000 and H281DRAFT_05001 overlap by 4 nucleotides H281DRAFT_05001 and H281DRAFT_05002 overlap by 16 nucleotides H281DRAFT_05002 and H281DRAFT_05003 overlap by 4 nucleotides H281DRAFT_05003 and H281DRAFT_05004 overlap by 4 nucleotides
H281DRAFT_05000: H281DRAFT_05000 - ATP synthase in type III secretion protein N, at 185,882 to 187,276
_05000
H281DRAFT_05001: H281DRAFT_05001 - type III secretion protein L, at 187,273 to 188,052
_05001
H281DRAFT_05002: H281DRAFT_05002 - type III secretion protein (HrpB4), at 188,037 to 188,852
_05002
H281DRAFT_05003: H281DRAFT_05003 - type III secretion apparatus lipoprotein, YscJ/HrcJ family, at 188,849 to 189,670
_05003
H281DRAFT_05004: H281DRAFT_05004 - type III secretion inner rod protein HrpB2, at 189,667 to 190,059
_05004
Position (kb) 188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 187.568 kb on + strand, within H281DRAFT_05001 at 187.569 kb on - strand, within H281DRAFT_05001 at 188.249 kb on + strand, within H281DRAFT_05002 at 188.689 kb on + strand, within H281DRAFT_05002 at 188.690 kb on - strand, within H281DRAFT_05002 at 188.694 kb on - strand, within H281DRAFT_05002 at 188.833 kb on + strand at 188.834 kb on - strand at 189.103 kb on + strand, within H281DRAFT_05003 at 189.104 kb on - strand, within H281DRAFT_05003
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 187,568 + H281DRAFT_05001 0.38 -0.1 187,569 - H281DRAFT_05001 0.38 +1.3 188,249 + H281DRAFT_05002 0.26 -0.2 188,689 + H281DRAFT_05002 0.80 -1.7 188,690 - H281DRAFT_05002 0.80 -1.0 188,694 - H281DRAFT_05002 0.81 -2.7 188,833 + +1.7 188,834 - -0.2 189,103 + H281DRAFT_05003 0.31 +0.0 189,104 - H281DRAFT_05003 0.31 -0.3
Or see this region's nucleotide sequence