Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04834

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04832 and H281DRAFT_04833 overlap by 14 nucleotidesH281DRAFT_04833 and H281DRAFT_04834 are separated by 46 nucleotidesH281DRAFT_04834 and H281DRAFT_04835 overlap by 1 nucleotides H281DRAFT_04832: H281DRAFT_04832 - Acetyltransferase (GNAT) domain-containing protein, at 266,253 to 267,227 _04832 H281DRAFT_04833: H281DRAFT_04833 - WxcM-like, C-terminal, at 267,214 to 267,624 _04833 H281DRAFT_04834: H281DRAFT_04834 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 267,671 to 268,768 _04834 H281DRAFT_04835: H281DRAFT_04835 - hypothetical protein, at 268,768 to 270,393 _04835 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 267.199 kb on + strandat 267.199 kb on + strandat 267.199 kb on + strandat 267.202 kb on + strandat 268.762 kb on + strandat 268.762 kb on + strandat 268.762 kb on + strandat 268.766 kb on + strandat 268.779 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
267,199 + -0.2
267,199 + +1.0
267,199 + -1.8
267,202 + +0.7
268,762 + -0.7
268,762 + +0.5
268,762 + +1.8
268,766 + -1.9
268,779 - -0.1

Or see this region's nucleotide sequence