Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04737

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04736 and H281DRAFT_04737 are separated by 177 nucleotidesH281DRAFT_04737 and H281DRAFT_04738 are separated by 94 nucleotidesH281DRAFT_04738 and H281DRAFT_04739 are separated by 102 nucleotides H281DRAFT_04736: H281DRAFT_04736 - Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin), at 143,891 to 144,529 _04736 H281DRAFT_04737: H281DRAFT_04737 - glutaryl-CoA dehydrogenase, at 144,707 to 145,897 _04737 H281DRAFT_04738: H281DRAFT_04738 - transcriptional regulator, IclR family, at 145,992 to 146,777 _04738 H281DRAFT_04739: H281DRAFT_04739 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 146,880 to 147,713 _04739 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 143.710 kb on - strandat 143.710 kb on - strandat 143.749 kb on + strandat 143.776 kb on + strandat 143.776 kb on + strandat 143.781 kb on + strandat 143.781 kb on + strandat 143.782 kb on - strandat 143.807 kb on + strandat 143.808 kb on - strandat 143.822 kb on - strandat 143.828 kb on + strandat 143.828 kb on + strandat 143.828 kb on + strandat 143.829 kb on - strandat 143.829 kb on - strandat 143.874 kb on + strandat 143.878 kb on + strandat 143.878 kb on + strandat 143.878 kb on + strandat 143.879 kb on - strandat 143.879 kb on - strandat 143.898 kb on + strandat 143.941 kb on + strandat 144.014 kb on - strand, within H281DRAFT_04736at 144.213 kb on - strand, within H281DRAFT_04736at 144.302 kb on - strand, within H281DRAFT_04736at 144.302 kb on - strand, within H281DRAFT_04736at 144.302 kb on - strand, within H281DRAFT_04736at 144.305 kb on + strand, within H281DRAFT_04736at 144.349 kb on - strand, within H281DRAFT_04736at 144.349 kb on - strand, within H281DRAFT_04736at 144.480 kb on - strandat 144.497 kb on + strandat 144.497 kb on + strandat 144.498 kb on - strandat 144.527 kb on + strandat 144.527 kb on + strandat 144.527 kb on + strandat 144.528 kb on - strandat 144.609 kb on - strandat 144.778 kb on - strandat 144.778 kb on - strandat 144.949 kb on + strand, within H281DRAFT_04737at 144.950 kb on - strand, within H281DRAFT_04737at 144.985 kb on + strand, within H281DRAFT_04737at 145.057 kb on + strand, within H281DRAFT_04737at 145.072 kb on - strand, within H281DRAFT_04737at 145.132 kb on - strand, within H281DRAFT_04737at 145.261 kb on + strand, within H281DRAFT_04737at 145.261 kb on + strand, within H281DRAFT_04737at 145.471 kb on + strand, within H281DRAFT_04737at 145.472 kb on - strand, within H281DRAFT_04737at 145.527 kb on + strandat 145.527 kb on + strand, within H281DRAFT_04737at 145.650 kb on + strand, within H281DRAFT_04737at 145.651 kb on - strand, within H281DRAFT_04737at 145.651 kb on - strand, within H281DRAFT_04737at 145.659 kb on + strand, within H281DRAFT_04737at 145.659 kb on + strand, within H281DRAFT_04737at 145.680 kb on + strand, within H281DRAFT_04737at 145.680 kb on + strand, within H281DRAFT_04737at 145.681 kb on - strand, within H281DRAFT_04737at 145.769 kb on + strand, within H281DRAFT_04737at 145.769 kb on + strand, within H281DRAFT_04737at 145.770 kb on - strand, within H281DRAFT_04737at 145.800 kb on + strandat 145.902 kb on + strandat 145.902 kb on + strandat 145.902 kb on + strandat 145.903 kb on - strandat 145.984 kb on - strandat 146.164 kb on - strand, within H281DRAFT_04738at 146.165 kb on + strand, within H281DRAFT_04738at 146.184 kb on + strand, within H281DRAFT_04738at 146.317 kb on + strand, within H281DRAFT_04738at 146.318 kb on - strand, within H281DRAFT_04738at 146.364 kb on + strand, within H281DRAFT_04738at 146.365 kb on - strand, within H281DRAFT_04738at 146.457 kb on + strand, within H281DRAFT_04738at 146.457 kb on + strand, within H281DRAFT_04738at 146.458 kb on - strand, within H281DRAFT_04738at 146.593 kb on - strand, within H281DRAFT_04738at 146.876 kb on + strandat 146.876 kb on + strandat 146.876 kb on + strandat 146.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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143,710 - +0.4
143,710 - -1.1
143,749 + -1.2
143,776 + -2.2
143,776 + -1.8
143,781 + -1.3
143,781 + -2.1
143,782 - +1.3
143,807 + +2.6
143,808 - +2.5
143,822 - -0.5
143,828 + -1.1
143,828 + -2.6
143,828 + -0.5
143,829 - +1.6
143,829 - +1.4
143,874 + -0.6
143,878 + +0.7
143,878 + -2.3
143,878 + -0.3
143,879 - +1.1
143,879 - +1.7
143,898 + -1.2
143,941 + -1.2
144,014 - H281DRAFT_04736 0.19 +0.6
144,213 - H281DRAFT_04736 0.50 +0.8
144,302 - H281DRAFT_04736 0.64 -0.5
144,302 - H281DRAFT_04736 0.64 +1.1
144,302 - H281DRAFT_04736 0.64 +0.3
144,305 + H281DRAFT_04736 0.65 -0.1
144,349 - H281DRAFT_04736 0.72 +1.1
144,349 - H281DRAFT_04736 0.72 +1.8
144,480 - +1.1
144,497 + +0.9
144,497 + +2.0
144,498 - +0.5
144,527 + +0.0
144,527 + -0.4
144,527 + +0.4
144,528 - -0.9
144,609 - +1.0
144,778 - -0.9
144,778 - -2.1
144,949 + H281DRAFT_04737 0.20 -0.1
144,950 - H281DRAFT_04737 0.20 +2.1
144,985 + H281DRAFT_04737 0.23 -0.7
145,057 + H281DRAFT_04737 0.29 -1.2
145,072 - H281DRAFT_04737 0.31 -1.1
145,132 - H281DRAFT_04737 0.36 -0.5
145,261 + H281DRAFT_04737 0.47 -0.7
145,261 + H281DRAFT_04737 0.47 -0.1
145,471 + H281DRAFT_04737 0.64 +0.6
145,472 - H281DRAFT_04737 0.64 +0.1
145,527 + +0.4
145,527 + H281DRAFT_04737 0.69 +1.1
145,650 + H281DRAFT_04737 0.79 -2.2
145,651 - H281DRAFT_04737 0.79 +0.5
145,651 - H281DRAFT_04737 0.79 -0.2
145,659 + H281DRAFT_04737 0.80 -2.2
145,659 + H281DRAFT_04737 0.80 +0.6
145,680 + H281DRAFT_04737 0.82 -0.8
145,680 + H281DRAFT_04737 0.82 -0.7
145,681 - H281DRAFT_04737 0.82 +0.8
145,769 + H281DRAFT_04737 0.89 +0.1
145,769 + H281DRAFT_04737 0.89 +0.1
145,770 - H281DRAFT_04737 0.89 -2.6
145,800 + -0.2
145,902 + +0.7
145,902 + -0.9
145,902 + +0.6
145,903 - -0.3
145,984 - +0.7
146,164 - H281DRAFT_04738 0.22 +0.7
146,165 + H281DRAFT_04738 0.22 -0.2
146,184 + H281DRAFT_04738 0.24 +0.9
146,317 + H281DRAFT_04738 0.41 +0.0
146,318 - H281DRAFT_04738 0.41 -0.3
146,364 + H281DRAFT_04738 0.47 -0.9
146,365 - H281DRAFT_04738 0.47 -0.6
146,457 + H281DRAFT_04738 0.59 +0.8
146,457 + H281DRAFT_04738 0.59 -0.8
146,458 - H281DRAFT_04738 0.59 -0.2
146,593 - H281DRAFT_04738 0.76 +1.0
146,876 + +0.9
146,876 + +0.7
146,876 + -0.0
146,877 - +0.9

Or see this region's nucleotide sequence