Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04709

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04707 and H281DRAFT_04708 overlap by 8 nucleotidesH281DRAFT_04708 and H281DRAFT_04709 are separated by 71 nucleotidesH281DRAFT_04709 and H281DRAFT_04710 are separated by 145 nucleotides H281DRAFT_04707: H281DRAFT_04707 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 120,334 to 121,020 _04707 H281DRAFT_04708: H281DRAFT_04708 - regulatory inactivation of DnaA Hda protein, at 121,013 to 121,756 _04708 H281DRAFT_04709: H281DRAFT_04709 - Predicted PurR-regulated permease PerM, at 121,828 to 122,904 _04709 H281DRAFT_04710: H281DRAFT_04710 - phosphoribosylformylglycinamidine cyclo-ligase, at 123,050 to 124,117 _04710 Position (kb) 121 122 123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 120.848 kb on + strand, within H281DRAFT_04707at 120.879 kb on - strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strandat 120.930 kb on + strand, within H281DRAFT_04707at 121.029 kb on - strandat 121.029 kb on - strandat 121.760 kb on - strandat 121.760 kb on - strandat 121.839 kb on - strandat 121.857 kb on - strandat 122.049 kb on - strand, within H281DRAFT_04709at 122.142 kb on - strand, within H281DRAFT_04709at 122.252 kb on - strand, within H281DRAFT_04709at 122.252 kb on - strand, within H281DRAFT_04709at 122.382 kb on - strand, within H281DRAFT_04709at 122.390 kb on - strand, within H281DRAFT_04709at 122.390 kb on - strand, within H281DRAFT_04709at 122.466 kb on - strand, within H281DRAFT_04709at 122.519 kb on - strand, within H281DRAFT_04709at 122.766 kb on - strand, within H281DRAFT_04709at 122.966 kb on - strandat 122.995 kb on - strandat 123.027 kb on + strandat 123.401 kb on + strand, within H281DRAFT_04710at 123.402 kb on - strand, within H281DRAFT_04710at 123.402 kb on - strand, within H281DRAFT_04710at 123.402 kb on - strand, within H281DRAFT_04710at 123.525 kb on - strand, within H281DRAFT_04710at 123.761 kb on + strand, within H281DRAFT_04710at 123.761 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
120,848 + H281DRAFT_04707 0.75 -4.1
120,879 - H281DRAFT_04707 0.79 -2.6
120,887 + H281DRAFT_04707 0.80 -3.3
120,887 + H281DRAFT_04707 0.80 -2.4
120,887 + -0.6
120,930 + H281DRAFT_04707 0.87 -1.8
121,029 - -0.5
121,029 - +0.4
121,760 - -0.9
121,760 - +0.6
121,839 - +1.0
121,857 - -1.4
122,049 - H281DRAFT_04709 0.21 +0.9
122,142 - H281DRAFT_04709 0.29 -2.5
122,252 - H281DRAFT_04709 0.39 -1.0
122,252 - H281DRAFT_04709 0.39 +1.4
122,382 - H281DRAFT_04709 0.51 -0.3
122,390 - H281DRAFT_04709 0.52 -2.4
122,390 - H281DRAFT_04709 0.52 +1.1
122,466 - H281DRAFT_04709 0.59 +0.3
122,519 - H281DRAFT_04709 0.64 +0.4
122,766 - H281DRAFT_04709 0.87 +1.3
122,966 - +0.9
122,995 - -0.0
123,027 + +0.5
123,401 + H281DRAFT_04710 0.33 -3.7
123,402 - H281DRAFT_04710 0.33 -1.6
123,402 - H281DRAFT_04710 0.33 -4.2
123,402 - H281DRAFT_04710 0.33 -3.2
123,525 - H281DRAFT_04710 0.44 -3.8
123,761 + H281DRAFT_04710 0.67 -2.8
123,761 + -0.7

Or see this region's nucleotide sequence