Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04287

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04286 and H281DRAFT_04287 are separated by 116 nucleotidesH281DRAFT_04287 and H281DRAFT_04288 are separated by 165 nucleotidesH281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotides H281DRAFT_04286: H281DRAFT_04286 - hypothetical protein, at 1,320 to 3,110 _04286 H281DRAFT_04287: H281DRAFT_04287 - D-amino-acid dehydrogenase, at 3,227 to 4,543 _04287 H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209 _04288 H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 Position (kb) 3 4 5Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2.253 kb on + strand, within H281DRAFT_04286at 2.287 kb on + strand, within H281DRAFT_04286at 2.288 kb on - strand, within H281DRAFT_04286at 2.406 kb on + strand, within H281DRAFT_04286at 2.407 kb on - strand, within H281DRAFT_04286at 2.481 kb on + strand, within H281DRAFT_04286at 2.482 kb on - strand, within H281DRAFT_04286at 2.516 kb on + strand, within H281DRAFT_04286at 2.517 kb on - strand, within H281DRAFT_04286at 2.517 kb on - strand, within H281DRAFT_04286at 2.631 kb on + strand, within H281DRAFT_04286at 2.787 kb on + strand, within H281DRAFT_04286at 2.867 kb on - strand, within H281DRAFT_04286at 2.867 kb on - strand, within H281DRAFT_04286at 3.009 kb on + strandat 3.009 kb on + strandat 3.009 kb on + strandat 3.010 kb on - strandat 3.010 kb on - strandat 3.124 kb on + strandat 3.138 kb on + strandat 3.159 kb on - strandat 3.159 kb on - strandat 3.159 kb on - strandat 3.265 kb on - strandat 3.309 kb on - strandat 3.352 kb on + strandat 3.352 kb on + strandat 3.352 kb on + strandat 3.476 kb on - strand, within H281DRAFT_04287at 3.655 kb on - strand, within H281DRAFT_04287at 3.655 kb on - strand, within H281DRAFT_04287at 3.735 kb on + strand, within H281DRAFT_04287at 3.777 kb on + strand, within H281DRAFT_04287at 4.054 kb on - strand, within H281DRAFT_04287at 4.156 kb on - strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.242 kb on + strand, within H281DRAFT_04287at 4.494 kb on + strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.543 kb on + strandat 4.544 kb on - strandat 4.544 kb on - strandat 4.589 kb on + strandat 4.649 kb on + strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.653 kb on - strandat 4.676 kb on + strandat 4.676 kb on + strandat 4.714 kb on + strandat 4.714 kb on + strandat 4.715 kb on - strandat 4.889 kb on + strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.932 kb on + strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.145 kb on - strand, within H281DRAFT_04288at 5.207 kb on + strandat 5.207 kb on + strandat 5.208 kb on - strandat 5.280 kb on - strandat 5.280 kb on - strandat 5.291 kb on - strandat 5.416 kb on + strand, within H281DRAFT_04289at 5.471 kb on + strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,253 + H281DRAFT_04286 0.52 +0.1
2,287 + H281DRAFT_04286 0.54 -0.5
2,288 - H281DRAFT_04286 0.54 -0.0
2,406 + H281DRAFT_04286 0.61 -0.7
2,407 - H281DRAFT_04286 0.61 -0.8
2,481 + H281DRAFT_04286 0.65 -4.2
2,482 - H281DRAFT_04286 0.65 -0.9
2,516 + H281DRAFT_04286 0.67 +0.1
2,517 - H281DRAFT_04286 0.67 -2.8
2,517 - H281DRAFT_04286 0.67 -0.6
2,631 + H281DRAFT_04286 0.73 -0.0
2,787 + H281DRAFT_04286 0.82 -1.0
2,867 - H281DRAFT_04286 0.86 -1.0
2,867 - H281DRAFT_04286 0.86 -1.6
3,009 + +0.1
3,009 + -0.0
3,009 + -1.0
3,010 - -0.8
3,010 - +0.4
3,124 + +0.9
3,138 + +0.1
3,159 - +1.1
3,159 - +3.1
3,159 - -0.5
3,265 - +0.1
3,309 - +0.3
3,352 + +0.8
3,352 + +1.0
3,352 + -0.5
3,476 - H281DRAFT_04287 0.19 -2.7
3,655 - H281DRAFT_04287 0.32 +0.6
3,655 - H281DRAFT_04287 0.32 +1.0
3,735 + H281DRAFT_04287 0.39 -0.5
3,777 + H281DRAFT_04287 0.42 +0.1
4,054 - H281DRAFT_04287 0.63 -0.6
4,156 - H281DRAFT_04287 0.71 +0.7
4,203 + H281DRAFT_04287 0.74 +0.5
4,203 + H281DRAFT_04287 0.74 -0.3
4,203 + H281DRAFT_04287 0.74 +0.3
4,242 + H281DRAFT_04287 0.77 +0.7
4,494 + -1.0
4,495 - -1.6
4,495 - -1.6
4,495 - -0.3
4,543 + +1.5
4,544 - +0.9
4,544 - +0.1
4,589 + +0.1
4,649 + +0.0
4,650 - -0.9
4,650 - +0.2
4,650 - +1.6
4,652 + +0.4
4,652 + +0.1
4,652 + -0.5
4,652 + -0.8
4,653 - -0.7
4,676 + -0.2
4,676 + -0.5
4,714 + +0.0
4,714 + +0.8
4,715 - -0.5
4,889 + H281DRAFT_04288 0.36 +0.9
4,890 - H281DRAFT_04288 0.36 -0.4
4,890 - H281DRAFT_04288 0.36 -1.4
4,932 + H281DRAFT_04288 0.45 +0.2
5,049 - H281DRAFT_04288 0.68 +0.5
5,049 - H281DRAFT_04288 0.68 -1.5
5,144 + H281DRAFT_04288 0.87 +0.3
5,144 + H281DRAFT_04288 0.87 +0.6
5,145 - H281DRAFT_04288 0.87 +0.8
5,207 + -1.2
5,207 + -0.5
5,208 - -0.7
5,280 - -0.6
5,280 - -2.7
5,291 - -1.8
5,416 + H281DRAFT_04289 0.11 +0.3
5,471 + H281DRAFT_04289 0.15 +0.5
5,472 - H281DRAFT_04289 0.15 -0.7
5,472 - H281DRAFT_04289 0.15 -1.7
5,472 - H281DRAFT_04289 0.15 +0.6
5,516 + H281DRAFT_04289 0.19 +1.2
5,516 + H281DRAFT_04289 0.19 +0.4
5,516 + H281DRAFT_04289 0.19 +0.0
5,516 + H281DRAFT_04289 0.19 +0.1
5,517 - H281DRAFT_04289 0.19 -0.1
5,517 - H281DRAFT_04289 0.19 -1.2
5,517 - H281DRAFT_04289 0.19 -0.5
5,517 - H281DRAFT_04289 0.19 -1.9

Or see this region's nucleotide sequence