Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04031 and H281DRAFT_04032 are separated by 77 nucleotides H281DRAFT_04032 and H281DRAFT_04033 are separated by 197 nucleotides H281DRAFT_04033 and H281DRAFT_04034 are separated by 106 nucleotides
H281DRAFT_04031: H281DRAFT_04031 - Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains, at 133,345 to 134,286
_04031
H281DRAFT_04032: H281DRAFT_04032 - conserved hypothetical protein, at 134,364 to 134,684
_04032
H281DRAFT_04033: H281DRAFT_04033 - YggT family protein, at 134,882 to 135,445
_04033
H281DRAFT_04034: H281DRAFT_04034 - tRNA_Gly_CCC, at 135,552 to 135,625
_04034
Position (kb) 134
135 Strain fitness (log2 ratio) -1
0
1
2 at 133.594 kb on - strand, within H281DRAFT_04031 at 133.594 kb on - strand, within H281DRAFT_04031 at 133.633 kb on + strand, within H281DRAFT_04031 at 133.732 kb on + strand, within H281DRAFT_04031 at 133.885 kb on + strand, within H281DRAFT_04031 at 133.885 kb on + strand, within H281DRAFT_04031 at 133.886 kb on - strand, within H281DRAFT_04031 at 133.886 kb on - strand, within H281DRAFT_04031 at 133.886 kb on - strand, within H281DRAFT_04031 at 133.903 kb on + strand, within H281DRAFT_04031 at 133.903 kb on + strand, within H281DRAFT_04031 at 133.904 kb on - strand, within H281DRAFT_04031 at 133.904 kb on - strand, within H281DRAFT_04031 at 134.143 kb on + strand, within H281DRAFT_04031 at 134.143 kb on + strand, within H281DRAFT_04031 at 134.143 kb on + strand, within H281DRAFT_04031 at 134.284 kb on + strand at 134.285 kb on - strand at 134.294 kb on + strand at 134.294 kb on + strand at 134.294 kb on + strand at 134.294 kb on + strand at 134.295 kb on - strand at 134.421 kb on + strand, within H281DRAFT_04032 at 134.422 kb on - strand, within H281DRAFT_04032 at 134.422 kb on - strand, within H281DRAFT_04032 at 134.424 kb on + strand, within H281DRAFT_04032 at 134.425 kb on - strand, within H281DRAFT_04032 at 134.425 kb on - strand, within H281DRAFT_04032 at 134.532 kb on + strand, within H281DRAFT_04032 at 134.532 kb on + strand, within H281DRAFT_04032 at 134.533 kb on - strand, within H281DRAFT_04032 at 134.533 kb on - strand, within H281DRAFT_04032 at 134.533 kb on - strand, within H281DRAFT_04032 at 134.533 kb on - strand at 134.578 kb on - strand, within H281DRAFT_04032 at 134.628 kb on + strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.800 kb on - strand at 134.800 kb on - strand at 134.870 kb on + strand at 134.870 kb on + strand at 134.870 kb on + strand at 135.009 kb on + strand, within H281DRAFT_04033 at 135.009 kb on + strand, within H281DRAFT_04033 at 135.009 kb on + strand, within H281DRAFT_04033 at 135.009 kb on + strand, within H281DRAFT_04033 at 135.010 kb on - strand, within H281DRAFT_04033 at 135.431 kb on + strand at 135.431 kb on + strand at 135.431 kb on + strand at 135.432 kb on - strand at 135.490 kb on + strand at 135.542 kb on - strand at 135.562 kb on + strand, within H281DRAFT_04034 at 135.562 kb on + strand, within H281DRAFT_04034 at 135.562 kb on + strand, within H281DRAFT_04034 at 135.565 kb on - strand, within H281DRAFT_04034 at 135.565 kb on - strand, within H281DRAFT_04034 at 135.570 kb on + strand, within H281DRAFT_04034 at 135.571 kb on - strand, within H281DRAFT_04034 at 135.573 kb on + strand, within H281DRAFT_04034 at 135.573 kb on + strand, within H281DRAFT_04034 at 135.573 kb on + strand, within H281DRAFT_04034 at 135.574 kb on - strand, within H281DRAFT_04034 at 135.579 kb on - strand, within H281DRAFT_04034 at 135.591 kb on + strand, within H281DRAFT_04034 at 135.628 kb on + strand at 135.628 kb on + strand at 135.678 kb on + strand at 135.678 kb on + strand at 135.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 133,594 - H281DRAFT_04031 0.26 +0.8 133,594 - H281DRAFT_04031 0.26 +0.5 133,633 + H281DRAFT_04031 0.31 +0.9 133,732 + H281DRAFT_04031 0.41 +1.1 133,885 + H281DRAFT_04031 0.57 -1.2 133,885 + H281DRAFT_04031 0.57 +0.9 133,886 - H281DRAFT_04031 0.57 +1.5 133,886 - H281DRAFT_04031 0.57 +0.9 133,886 - H281DRAFT_04031 0.57 -1.3 133,903 + H281DRAFT_04031 0.59 -1.2 133,903 + H281DRAFT_04031 0.59 +0.6 133,904 - H281DRAFT_04031 0.59 +0.7 133,904 - H281DRAFT_04031 0.59 +0.6 134,143 + H281DRAFT_04031 0.85 +0.3 134,143 + H281DRAFT_04031 0.85 +0.5 134,143 + H281DRAFT_04031 0.85 +1.1 134,284 + -1.0 134,285 - +0.9 134,294 + +1.5 134,294 + +0.7 134,294 + +0.2 134,294 + +0.0 134,295 - +0.8 134,421 + H281DRAFT_04032 0.18 +0.6 134,422 - H281DRAFT_04032 0.18 +0.8 134,422 - H281DRAFT_04032 0.18 +0.4 134,424 + H281DRAFT_04032 0.19 +0.7 134,425 - H281DRAFT_04032 0.19 +0.5 134,425 - H281DRAFT_04032 0.19 -0.3 134,532 + H281DRAFT_04032 0.52 +2.1 134,532 + H281DRAFT_04032 0.52 +1.4 134,533 - H281DRAFT_04032 0.53 -0.4 134,533 - H281DRAFT_04032 0.53 +0.5 134,533 - H281DRAFT_04032 0.53 -0.7 134,533 - +0.3 134,578 - H281DRAFT_04032 0.67 -0.9 134,628 + H281DRAFT_04032 0.82 +0.9 134,629 - H281DRAFT_04032 0.83 -0.6 134,629 - H281DRAFT_04032 0.83 -1.7 134,629 - H281DRAFT_04032 0.83 +0.6 134,629 - H281DRAFT_04032 0.83 +0.2 134,800 - +0.9 134,800 - +0.1 134,870 + +1.1 134,870 + +0.4 134,870 + -1.3 135,009 + H281DRAFT_04033 0.23 +1.1 135,009 + H281DRAFT_04033 0.23 +1.2 135,009 + H281DRAFT_04033 0.23 +1.5 135,009 + H281DRAFT_04033 0.23 -0.1 135,010 - H281DRAFT_04033 0.23 +0.3 135,431 + +0.2 135,431 + +0.9 135,431 + -0.1 135,432 - -1.3 135,490 + +0.1 135,542 - +0.3 135,562 + H281DRAFT_04034 0.14 -0.3 135,562 + H281DRAFT_04034 0.14 +0.0 135,562 + H281DRAFT_04034 0.14 +1.2 135,565 - H281DRAFT_04034 0.18 -0.2 135,565 - H281DRAFT_04034 0.18 -0.1 135,570 + H281DRAFT_04034 0.24 +0.3 135,571 - H281DRAFT_04034 0.26 -0.4 135,573 + H281DRAFT_04034 0.28 +0.5 135,573 + H281DRAFT_04034 0.28 +1.6 135,573 + H281DRAFT_04034 0.28 +0.3 135,574 - H281DRAFT_04034 0.30 +0.9 135,579 - H281DRAFT_04034 0.36 +0.5 135,591 + H281DRAFT_04034 0.53 -0.0 135,628 + +0.4 135,628 + +0.1 135,678 + +0.8 135,678 + +0.2 135,679 - +0.4
Or see this region's nucleotide sequence