Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04016 and H281DRAFT_04017 are separated by 133 nucleotides H281DRAFT_04017 and H281DRAFT_04018 are separated by 138 nucleotides H281DRAFT_04018 and H281DRAFT_04019 are separated by 56 nucleotides
H281DRAFT_04016: H281DRAFT_04016 - MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 117,607 to 118,959
_04016
H281DRAFT_04017: H281DRAFT_04017 - hypothetical protein, at 119,093 to 119,671
_04017
H281DRAFT_04018: H281DRAFT_04018 - glutamate-1-semialdehyde 2,1-aminomutase, at 119,810 to 121,093
_04018
H281DRAFT_04019: H281DRAFT_04019 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 121,150 to 122,307
_04019
Position (kb) 119
120
121
122 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 118.876 kb on - strand at 118.907 kb on + strand at 119.072 kb on - strand at 119.072 kb on - strand at 119.072 kb on - strand at 119.288 kb on + strand, within H281DRAFT_04017 at 119.289 kb on - strand, within H281DRAFT_04017 at 119.307 kb on - strand, within H281DRAFT_04017 at 119.307 kb on - strand, within H281DRAFT_04017 at 119.363 kb on + strand, within H281DRAFT_04017 at 119.364 kb on - strand, within H281DRAFT_04017 at 119.364 kb on - strand, within H281DRAFT_04017 at 119.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 118,876 - -3.0 118,907 + +0.2 119,072 - -4.1 119,072 - -3.2 119,072 - -1.9 119,288 + H281DRAFT_04017 0.34 -1.0 119,289 - H281DRAFT_04017 0.34 -2.2 119,307 - H281DRAFT_04017 0.37 -0.3 119,307 - H281DRAFT_04017 0.37 -2.4 119,363 + H281DRAFT_04017 0.47 -3.5 119,364 - H281DRAFT_04017 0.47 -2.0 119,364 - H281DRAFT_04017 0.47 -0.8 119,726 - +0.9
Or see this region's nucleotide sequence