Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03986

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03985 and H281DRAFT_03986 are separated by 639 nucleotidesH281DRAFT_03986 and H281DRAFT_03987 are separated by 80 nucleotidesH281DRAFT_03987 and H281DRAFT_03988 are separated by 187 nucleotides H281DRAFT_03985: H281DRAFT_03985 - Beta-ketoacyl synthase, N-terminal domain, at 91,099 to 91,968 _03985 H281DRAFT_03986: H281DRAFT_03986 - Putative Ca2+/H+ antiporter, TMEM165/GDT1 family, at 92,608 to 93,225 _03986 H281DRAFT_03987: H281DRAFT_03987 - protein of unknown function (DUF4136), at 93,306 to 94,016 _03987 H281DRAFT_03988: H281DRAFT_03988 - alanyl aminopeptidase. Metallo peptidase. MEROPS family M01, at 94,204 to 96,978 _03988 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 91.821 kb on + strand, within H281DRAFT_03985at 91.822 kb on - strand, within H281DRAFT_03985at 91.864 kb on - strand, within H281DRAFT_03985at 91.922 kb on - strandat 91.969 kb on - strandat 91.969 kb on - strandat 91.969 kb on - strandat 92.027 kb on - strandat 92.027 kb on - strandat 92.061 kb on + strandat 92.066 kb on - strandat 92.066 kb on - strandat 92.090 kb on + strandat 92.090 kb on + strandat 92.091 kb on - strandat 92.125 kb on + strandat 92.163 kb on - strandat 92.210 kb on - strandat 92.213 kb on - strandat 92.250 kb on - strandat 92.253 kb on + strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.360 kb on + strandat 92.419 kb on + strandat 92.420 kb on - strandat 92.420 kb on - strandat 92.766 kb on + strand, within H281DRAFT_03986at 92.875 kb on - strand, within H281DRAFT_03986at 92.922 kb on - strand, within H281DRAFT_03986at 93.425 kb on + strand, within H281DRAFT_03987at 93.478 kb on + strand, within H281DRAFT_03987at 93.478 kb on + strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.536 kb on - strand, within H281DRAFT_03987at 93.653 kb on - strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.697 kb on + strand, within H281DRAFT_03987at 93.697 kb on + strand, within H281DRAFT_03987at 93.698 kb on - strand, within H281DRAFT_03987at 93.698 kb on - strand, within H281DRAFT_03987at 93.739 kb on + strand, within H281DRAFT_03987at 93.757 kb on + strand, within H281DRAFT_03987at 93.757 kb on + strand, within H281DRAFT_03987at 93.826 kb on + strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.937 kb on + strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 94.055 kb on + strandat 94.055 kb on + strandat 94.056 kb on - strandat 94.056 kb on - strandat 94.061 kb on - strandat 94.064 kb on + strandat 94.064 kb on + strandat 94.110 kb on + strandat 94.110 kb on + strandat 94.110 kb on + strandat 94.111 kb on - strandat 94.200 kb on + strandat 94.201 kb on - strandat 94.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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91,821 + H281DRAFT_03985 0.83 -0.3
91,822 - H281DRAFT_03985 0.83 -0.7
91,864 - H281DRAFT_03985 0.88 -1.5
91,922 - +0.4
91,969 - +0.4
91,969 - -0.5
91,969 - -1.2
92,027 - -0.7
92,027 - -3.0
92,061 + +0.2
92,066 - +0.3
92,066 - -1.8
92,090 + -3.2
92,090 + +0.6
92,091 - -1.0
92,125 + +0.8
92,163 - +1.6
92,210 - -0.7
92,213 - +2.3
92,250 - -0.6
92,253 + +0.7
92,301 + -0.7
92,301 + +0.2
92,301 + +0.4
92,301 + +1.7
92,360 + -0.2
92,419 + +0.6
92,420 - -0.5
92,420 - +0.2
92,766 + H281DRAFT_03986 0.26 +0.5
92,875 - H281DRAFT_03986 0.43 -0.1
92,922 - H281DRAFT_03986 0.51 +0.1
93,425 + H281DRAFT_03987 0.17 -2.4
93,478 + H281DRAFT_03987 0.24 -0.6
93,478 + H281DRAFT_03987 0.24 +0.5
93,479 - H281DRAFT_03987 0.24 +0.5
93,479 - H281DRAFT_03987 0.24 -2.3
93,479 - H281DRAFT_03987 0.24 +0.1
93,479 - H281DRAFT_03987 0.24 -0.8
93,536 - H281DRAFT_03987 0.32 -2.1
93,653 - H281DRAFT_03987 0.49 -1.0
93,694 + H281DRAFT_03987 0.55 -0.1
93,694 + H281DRAFT_03987 0.55 +0.7
93,694 + H281DRAFT_03987 0.55 +1.9
93,695 - H281DRAFT_03987 0.55 +0.8
93,695 - H281DRAFT_03987 0.55 +2.3
93,695 - H281DRAFT_03987 0.55 +0.0
93,697 + H281DRAFT_03987 0.55 +2.2
93,697 + H281DRAFT_03987 0.55 -2.2
93,698 - H281DRAFT_03987 0.55 +1.0
93,698 - H281DRAFT_03987 0.55 +1.4
93,739 + H281DRAFT_03987 0.61 +0.7
93,757 + H281DRAFT_03987 0.63 +0.9
93,757 + H281DRAFT_03987 0.63 +1.5
93,826 + H281DRAFT_03987 0.73 -0.0
93,827 - H281DRAFT_03987 0.73 +0.9
93,827 - H281DRAFT_03987 0.73 +0.1
93,827 - H281DRAFT_03987 0.73 +0.4
93,937 + H281DRAFT_03987 0.89 +0.2
93,938 - H281DRAFT_03987 0.89 +0.2
93,938 - H281DRAFT_03987 0.89 +1.6
93,938 - H281DRAFT_03987 0.89 -0.0
93,938 - H281DRAFT_03987 0.89 +0.1
93,938 - H281DRAFT_03987 0.89 -2.5
94,055 + +1.0
94,055 + +0.9
94,056 - +0.1
94,056 - +1.1
94,061 - +1.6
94,064 + +0.3
94,064 + +0.1
94,110 + +1.0
94,110 + +1.1
94,110 + +0.4
94,111 - -3.0
94,200 + +0.5
94,201 - +0.4
94,201 - +0.9

Or see this region's nucleotide sequence