Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03924

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03923 and H281DRAFT_03924 are separated by 52 nucleotidesH281DRAFT_03924 and H281DRAFT_03925 are separated by 84 nucleotides H281DRAFT_03923: H281DRAFT_03923 - prephenate dehydrogenase (EC 1.3.1.12), at 19,560 to 20,501 _03923 H281DRAFT_03924: H281DRAFT_03924 - histidinol-phosphate aminotransferase, at 20,554 to 21,666 _03924 H281DRAFT_03925: H281DRAFT_03925 - chorismate mutase, at 21,751 to 22,833 _03925 Position (kb) 20 21 22Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 20.649 kb on - strandat 20.762 kb on - strand, within H281DRAFT_03924at 20.766 kb on - strand, within H281DRAFT_03924at 20.766 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 21.069 kb on - strand, within H281DRAFT_03924at 21.078 kb on - strand, within H281DRAFT_03924at 21.157 kb on - strand, within H281DRAFT_03924at 21.300 kb on - strand, within H281DRAFT_03924at 21.562 kb on - strandat 21.562 kb on - strandat 21.562 kb on - strandat 21.621 kb on - strandat 21.631 kb on - strandat 21.638 kb on - strandat 21.638 kb on - strandat 21.638 kb on - strandat 21.684 kb on - strandat 21.687 kb on - strandat 21.731 kb on + strandat 21.862 kb on - strand, within H281DRAFT_03925at 21.864 kb on - strand, within H281DRAFT_03925at 21.864 kb on - strand, within H281DRAFT_03925at 21.864 kb on - strand, within H281DRAFT_03925at 21.864 kb on - strand, within H281DRAFT_03925at 21.873 kb on - strand, within H281DRAFT_03925at 21.928 kb on - strand, within H281DRAFT_03925at 22.454 kb on - strand, within H281DRAFT_03925at 22.503 kb on - strand, within H281DRAFT_03925at 22.503 kb on - strand, within H281DRAFT_03925at 22.527 kb on - strand, within H281DRAFT_03925at 22.527 kb on - strand, within H281DRAFT_03925at 22.527 kb on - strand, within H281DRAFT_03925

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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20,649 - +0.9
20,762 - H281DRAFT_03924 0.19 +0.4
20,766 - H281DRAFT_03924 0.19 +0.7
20,766 - H281DRAFT_03924 0.19 +0.1
20,890 - H281DRAFT_03924 0.30 -1.7
20,890 - H281DRAFT_03924 0.30 -2.2
20,890 - H281DRAFT_03924 0.30 -0.7
20,890 - H281DRAFT_03924 0.30 +0.9
21,069 - H281DRAFT_03924 0.46 +0.1
21,078 - H281DRAFT_03924 0.47 -0.2
21,157 - H281DRAFT_03924 0.54 +0.6
21,300 - H281DRAFT_03924 0.67 -0.2
21,562 - +2.0
21,562 - +0.8
21,562 - -0.0
21,621 - +1.2
21,631 - +0.5
21,638 - +0.2
21,638 - -0.6
21,638 - +0.8
21,684 - -3.0
21,687 - +0.5
21,731 + -2.0
21,862 - H281DRAFT_03925 0.10 -3.7
21,864 - H281DRAFT_03925 0.10 -3.8
21,864 - H281DRAFT_03925 0.10 -3.8
21,864 - H281DRAFT_03925 0.10 -0.5
21,864 - H281DRAFT_03925 0.10 -3.3
21,873 - H281DRAFT_03925 0.11 -3.7
21,928 - H281DRAFT_03925 0.16 -4.4
22,454 - H281DRAFT_03925 0.65 -5.8
22,503 - H281DRAFT_03925 0.69 -4.1
22,503 - H281DRAFT_03925 0.69 -0.8
22,527 - H281DRAFT_03925 0.72 -4.2
22,527 - H281DRAFT_03925 0.72 -2.8
22,527 - H281DRAFT_03925 0.72 -2.1

Or see this region's nucleotide sequence