Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03891 and H281DRAFT_03892 are separated by 11 nucleotides H281DRAFT_03892 and H281DRAFT_03893 are separated by 152 nucleotides H281DRAFT_03893 and H281DRAFT_03894 are separated by 245 nucleotides
H281DRAFT_03891: H281DRAFT_03891 - Probable cobalt transporter subunit (CbtB), at 422,898 to 423,119
_03891
H281DRAFT_03892: H281DRAFT_03892 - Uncharacterized membrane protein, predicted cobalt tansporter CbtA, at 423,131 to 423,925
_03892
H281DRAFT_03893: H281DRAFT_03893 - hypothetical protein, at 424,078 to 424,905
_03893
H281DRAFT_03894: H281DRAFT_03894 - 3-methylfumaryl-CoA hydratase, at 425,151 to 425,993
_03894
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 423.398 kb on + strand, within H281DRAFT_03892 at 423.398 kb on + strand, within H281DRAFT_03892 at 423.399 kb on - strand, within H281DRAFT_03892 at 423.399 kb on - strand, within H281DRAFT_03892 at 423.440 kb on + strand, within H281DRAFT_03892 at 423.447 kb on - strand, within H281DRAFT_03892 at 423.539 kb on + strand, within H281DRAFT_03892 at 423.853 kb on - strand at 424.003 kb on - strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.080 kb on - strand at 424.080 kb on - strand at 424.080 kb on - strand at 424.083 kb on + strand at 424.140 kb on + strand at 424.140 kb on + strand at 424.141 kb on - strand at 424.194 kb on - strand, within H281DRAFT_03893 at 424.194 kb on - strand, within H281DRAFT_03893 at 424.195 kb on + strand, within H281DRAFT_03893 at 424.195 kb on + strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.389 kb on - strand, within H281DRAFT_03893 at 424.410 kb on + strand, within H281DRAFT_03893 at 424.410 kb on + strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.413 kb on - strand, within H281DRAFT_03893 at 424.413 kb on - strand, within H281DRAFT_03893 at 424.413 kb on - strand at 424.413 kb on - strand, within H281DRAFT_03893 at 424.427 kb on + strand, within H281DRAFT_03893 at 424.427 kb on + strand, within H281DRAFT_03893 at 424.427 kb on + strand, within H281DRAFT_03893 at 424.428 kb on - strand, within H281DRAFT_03893 at 424.428 kb on - strand, within H281DRAFT_03893 at 424.438 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.617 kb on - strand, within H281DRAFT_03893 at 424.622 kb on + strand, within H281DRAFT_03893 at 424.622 kb on + strand, within H281DRAFT_03893 at 424.623 kb on - strand, within H281DRAFT_03893 at 424.657 kb on + strand, within H281DRAFT_03893 at 424.689 kb on - strand, within H281DRAFT_03893 at 424.899 kb on + strand at 424.900 kb on - strand at 424.945 kb on + strand at 424.945 kb on + strand at 424.945 kb on + strand at 424.946 kb on - strand at 424.946 kb on - strand at 424.946 kb on - strand at 424.946 kb on - strand at 424.986 kb on + strand at 424.986 kb on + strand at 425.080 kb on - strand at 425.109 kb on + strand at 425.109 kb on + strand at 425.109 kb on + strand at 425.109 kb on + strand at 425.110 kb on - strand at 425.112 kb on + strand at 425.112 kb on + strand at 425.113 kb on - strand at 425.113 kb on - strand at 425.301 kb on + strand at 425.302 kb on - strand, within H281DRAFT_03894 at 425.302 kb on - strand, within H281DRAFT_03894 at 425.456 kb on + strand, within H281DRAFT_03894 at 425.581 kb on - strand, within H281DRAFT_03894 at 425.757 kb on + strand, within H281DRAFT_03894
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 423,398 + H281DRAFT_03892 0.34 +0.8 423,398 + H281DRAFT_03892 0.34 +1.2 423,399 - H281DRAFT_03892 0.34 -0.2 423,399 - H281DRAFT_03892 0.34 +0.5 423,440 + H281DRAFT_03892 0.39 -0.5 423,447 - H281DRAFT_03892 0.40 +1.3 423,539 + H281DRAFT_03892 0.51 +0.7 423,853 - -0.0 424,003 - -0.0 424,079 + -0.0 424,079 + -0.9 424,079 + +0.8 424,079 + -0.9 424,079 + +0.2 424,079 + -1.1 424,080 - -1.6 424,080 - +0.6 424,080 - +0.1 424,083 + +0.5 424,140 + -0.0 424,140 + +1.2 424,141 - +0.0 424,194 - H281DRAFT_03893 0.14 -1.7 424,194 - H281DRAFT_03893 0.14 -2.5 424,195 + H281DRAFT_03893 0.14 -0.6 424,195 + H281DRAFT_03893 0.14 +0.7 424,196 - H281DRAFT_03893 0.14 -0.3 424,196 - H281DRAFT_03893 0.14 +1.5 424,196 - H281DRAFT_03893 0.14 +0.5 424,196 - H281DRAFT_03893 0.14 +0.3 424,389 - H281DRAFT_03893 0.38 -1.6 424,410 + H281DRAFT_03893 0.40 +0.7 424,410 + H281DRAFT_03893 0.40 -0.4 424,411 - H281DRAFT_03893 0.40 +0.5 424,411 - H281DRAFT_03893 0.40 -0.9 424,411 - H281DRAFT_03893 0.40 +0.5 424,411 - H281DRAFT_03893 0.40 -0.0 424,411 - H281DRAFT_03893 0.40 -1.0 424,413 - H281DRAFT_03893 0.40 +0.6 424,413 - H281DRAFT_03893 0.40 +0.7 424,413 - +1.5 424,413 - H281DRAFT_03893 0.40 +0.3 424,427 + H281DRAFT_03893 0.42 +0.9 424,427 + H281DRAFT_03893 0.42 +0.1 424,427 + H281DRAFT_03893 0.42 -0.1 424,428 - H281DRAFT_03893 0.42 -1.4 424,428 - H281DRAFT_03893 0.42 +0.3 424,438 + H281DRAFT_03893 0.43 +0.6 424,616 + H281DRAFT_03893 0.65 -0.7 424,616 + H281DRAFT_03893 0.65 -0.3 424,616 + H281DRAFT_03893 0.65 -0.9 424,616 + H281DRAFT_03893 0.65 +0.2 424,617 - H281DRAFT_03893 0.65 -0.0 424,622 + H281DRAFT_03893 0.66 +1.0 424,622 + H281DRAFT_03893 0.66 -1.6 424,623 - H281DRAFT_03893 0.66 -0.1 424,657 + H281DRAFT_03893 0.70 +0.1 424,689 - H281DRAFT_03893 0.74 -0.3 424,899 + +0.9 424,900 - +0.3 424,945 + -0.0 424,945 + +0.4 424,945 + +0.9 424,946 - +0.1 424,946 - +0.8 424,946 - +1.0 424,946 - -0.0 424,986 + +0.1 424,986 + +0.5 425,080 - -0.7 425,109 + +0.9 425,109 + +0.4 425,109 + -0.3 425,109 + -2.6 425,110 - -0.1 425,112 + +1.1 425,112 + +0.0 425,113 - +1.9 425,113 - -0.3 425,301 + -1.3 425,302 - H281DRAFT_03894 0.18 -0.1 425,302 - H281DRAFT_03894 0.18 +1.3 425,456 + H281DRAFT_03894 0.36 +1.4 425,581 - H281DRAFT_03894 0.51 +0.6 425,757 + H281DRAFT_03894 0.72 +0.3
Or see this region's nucleotide sequence