Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03628 and H281DRAFT_03629 are separated by 205 nucleotides H281DRAFT_03629 and H281DRAFT_03630 are separated by 3 nucleotides H281DRAFT_03630 and H281DRAFT_03631 are separated by 144 nucleotides H281DRAFT_03631 and H281DRAFT_03632 are separated by 139 nucleotides
H281DRAFT_03628: H281DRAFT_03628 - Protein of unknown function (DUF3564), at 138,132 to 138,491
_03628
H281DRAFT_03629: H281DRAFT_03629 - protein of unknown function (DUF4410), at 138,697 to 139,371
_03629
H281DRAFT_03630: H281DRAFT_03630 - acid phosphatase, at 139,375 to 141,084
_03630
H281DRAFT_03631: H281DRAFT_03631 - hypothetical protein, at 141,229 to 141,525
_03631
H281DRAFT_03632: H281DRAFT_03632 - transcriptional regulator, IclR family, at 141,665 to 142,675
_03632
Position (kb)
139
140
141
142 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 138.430 kb on - strand, within H281DRAFT_03628 at 138.473 kb on + strand at 138.474 kb on - strand at 138.492 kb on - strand at 138.532 kb on + strand at 138.549 kb on + strand at 138.609 kb on + strand at 138.774 kb on + strand, within H281DRAFT_03629 at 139.192 kb on + strand, within H281DRAFT_03629 at 139.192 kb on + strand, within H281DRAFT_03629 at 139.192 kb on + strand, within H281DRAFT_03629 at 139.193 kb on - strand, within H281DRAFT_03629 at 139.255 kb on + strand, within H281DRAFT_03629 at 139.255 kb on + strand, within H281DRAFT_03629 at 139.665 kb on + strand, within H281DRAFT_03630 at 139.666 kb on - strand, within H281DRAFT_03630 at 139.755 kb on + strand, within H281DRAFT_03630 at 139.756 kb on - strand, within H281DRAFT_03630 at 139.778 kb on + strand at 139.868 kb on + strand, within H281DRAFT_03630 at 139.868 kb on + strand, within H281DRAFT_03630 at 139.872 kb on + strand, within H281DRAFT_03630 at 139.899 kb on - strand, within H281DRAFT_03630 at 139.899 kb on - strand, within H281DRAFT_03630 at 140.132 kb on + strand, within H281DRAFT_03630 at 140.133 kb on - strand, within H281DRAFT_03630 at 140.172 kb on + strand, within H281DRAFT_03630 at 140.391 kb on + strand, within H281DRAFT_03630 at 140.392 kb on - strand, within H281DRAFT_03630 at 140.392 kb on - strand, within H281DRAFT_03630 at 140.406 kb on - strand, within H281DRAFT_03630 at 140.406 kb on - strand, within H281DRAFT_03630 at 140.654 kb on + strand, within H281DRAFT_03630 at 140.654 kb on + strand, within H281DRAFT_03630 at 140.654 kb on + strand, within H281DRAFT_03630 at 140.753 kb on + strand, within H281DRAFT_03630 at 140.753 kb on + strand, within H281DRAFT_03630 at 140.773 kb on - strand, within H281DRAFT_03630 at 140.808 kb on - strand, within H281DRAFT_03630 at 140.808 kb on - strand, within H281DRAFT_03630 at 140.837 kb on + strand, within H281DRAFT_03630 at 141.045 kb on + strand at 141.158 kb on + strand at 141.158 kb on + strand at 141.230 kb on + strand at 141.231 kb on - strand at 141.259 kb on - strand, within H281DRAFT_03631 at 141.259 kb on - strand, within H281DRAFT_03631 at 141.461 kb on - strand, within H281DRAFT_03631 at 141.461 kb on - strand, within H281DRAFT_03631 at 141.461 kb on - strand, within H281DRAFT_03631 at 141.483 kb on - strand, within H281DRAFT_03631 at 141.601 kb on + strand at 141.618 kb on + strand at 141.619 kb on - strand at 141.619 kb on - strand at 141.619 kb on - strand at 141.857 kb on + strand, within H281DRAFT_03632 at 141.858 kb on - strand, within H281DRAFT_03632 at 141.858 kb on - strand, within H281DRAFT_03632 at 141.921 kb on + strand, within H281DRAFT_03632 at 141.967 kb on + strand, within H281DRAFT_03632 at 141.968 kb on - strand, within H281DRAFT_03632 at 141.968 kb on - strand, within H281DRAFT_03632 at 142.035 kb on - strand, within H281DRAFT_03632 at 142.060 kb on - strand, within H281DRAFT_03632
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 138,430 - H281DRAFT_03628 0.83 +0.4 138,473 + -1.6 138,474 - -0.2 138,492 - +0.1 138,532 + -0.6 138,549 + -0.3 138,609 + +1.1 138,774 + H281DRAFT_03629 0.11 -0.3 139,192 + H281DRAFT_03629 0.73 -0.8 139,192 + H281DRAFT_03629 0.73 +0.6 139,192 + H281DRAFT_03629 0.73 +0.3 139,193 - H281DRAFT_03629 0.73 +0.3 139,255 + H281DRAFT_03629 0.83 +0.0 139,255 + H281DRAFT_03629 0.83 -1.2 139,665 + H281DRAFT_03630 0.17 +0.1 139,666 - H281DRAFT_03630 0.17 +0.4 139,755 + H281DRAFT_03630 0.22 -0.6 139,756 - H281DRAFT_03630 0.22 -0.3 139,778 + -1.2 139,868 + H281DRAFT_03630 0.29 -1.3 139,868 + H281DRAFT_03630 0.29 -0.3 139,872 + H281DRAFT_03630 0.29 -0.0 139,899 - H281DRAFT_03630 0.31 -0.9 139,899 - H281DRAFT_03630 0.31 -0.4 140,132 + H281DRAFT_03630 0.44 +0.2 140,133 - H281DRAFT_03630 0.44 -2.2 140,172 + H281DRAFT_03630 0.47 -1.0 140,391 + H281DRAFT_03630 0.59 +0.3 140,392 - H281DRAFT_03630 0.59 +0.7 140,392 - H281DRAFT_03630 0.59 +0.1 140,406 - H281DRAFT_03630 0.60 +0.2 140,406 - H281DRAFT_03630 0.60 +0.8 140,654 + H281DRAFT_03630 0.75 +0.5 140,654 + H281DRAFT_03630 0.75 -0.3 140,654 + H281DRAFT_03630 0.75 -0.8 140,753 + H281DRAFT_03630 0.81 -0.8 140,753 + H281DRAFT_03630 0.81 -1.6 140,773 - H281DRAFT_03630 0.82 -0.0 140,808 - H281DRAFT_03630 0.84 +0.3 140,808 - H281DRAFT_03630 0.84 -1.9 140,837 + H281DRAFT_03630 0.85 -0.1 141,045 + +0.3 141,158 + +0.7 141,158 + -2.5 141,230 + -0.0 141,231 - -3.1 141,259 - H281DRAFT_03631 0.10 -1.8 141,259 - H281DRAFT_03631 0.10 -0.1 141,461 - H281DRAFT_03631 0.78 +0.6 141,461 - H281DRAFT_03631 0.78 -0.5 141,461 - H281DRAFT_03631 0.78 -1.9 141,483 - H281DRAFT_03631 0.86 -0.2 141,601 + +0.1 141,618 + -1.6 141,619 - -1.4 141,619 - -0.4 141,619 - -0.4 141,857 + H281DRAFT_03632 0.19 -0.0 141,858 - H281DRAFT_03632 0.19 +3.0 141,858 - H281DRAFT_03632 0.19 -0.7 141,921 + H281DRAFT_03632 0.25 -1.3 141,967 + H281DRAFT_03632 0.30 -2.7 141,968 - H281DRAFT_03632 0.30 +1.9 141,968 - H281DRAFT_03632 0.30 -1.3 142,035 - H281DRAFT_03632 0.37 +0.4 142,060 - H281DRAFT_03632 0.39 +0.0
Or see this region's nucleotide sequence