Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03604

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03603 and H281DRAFT_03604 are separated by 242 nucleotidesH281DRAFT_03604 and H281DRAFT_03605 are separated by 661 nucleotides H281DRAFT_03603: H281DRAFT_03603 - hypothetical protein, at 110,323 to 111,405 _03603 H281DRAFT_03604: H281DRAFT_03604 - Signal transduction histidine kinase, at 111,648 to 113,930 _03604 H281DRAFT_03605: H281DRAFT_03605 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 114,592 to 114,960 _03605 Position (kb) 111 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2 3at 110.822 kb on + strand, within H281DRAFT_03603at 110.822 kb on + strand, within H281DRAFT_03603at 110.823 kb on - strand, within H281DRAFT_03603at 110.823 kb on - strand, within H281DRAFT_03603at 110.841 kb on + strand, within H281DRAFT_03603at 110.842 kb on - strand, within H281DRAFT_03603at 111.145 kb on + strand, within H281DRAFT_03603at 111.145 kb on + strand, within H281DRAFT_03603at 111.146 kb on - strand, within H281DRAFT_03603at 111.235 kb on + strand, within H281DRAFT_03603at 111.235 kb on + strand, within H281DRAFT_03603at 111.235 kb on + strand, within H281DRAFT_03603at 111.236 kb on - strand, within H281DRAFT_03603at 111.337 kb on + strandat 111.337 kb on + strandat 111.338 kb on - strandat 111.338 kb on - strandat 111.340 kb on + strandat 111.340 kb on + strandat 111.340 kb on + strandat 111.340 kb on + strandat 111.371 kb on + strandat 111.372 kb on - strandat 111.372 kb on - strandat 111.372 kb on - strandat 111.372 kb on - strandat 111.372 kb on - strandat 111.375 kb on + strandat 111.375 kb on + strandat 111.375 kb on + strandat 111.376 kb on - strandat 111.396 kb on + strandat 111.396 kb on + strandat 111.396 kb on + strandat 111.580 kb on + strandat 111.649 kb on + strandat 111.649 kb on + strandat 111.649 kb on + strandat 111.650 kb on - strandat 111.797 kb on - strandat 111.797 kb on - strandat 111.819 kb on + strandat 111.820 kb on - strandat 111.881 kb on + strand, within H281DRAFT_03604at 111.881 kb on + strand, within H281DRAFT_03604at 111.881 kb on + strand, within H281DRAFT_03604at 111.882 kb on - strand, within H281DRAFT_03604at 111.882 kb on - strand, within H281DRAFT_03604at 111.882 kb on - strand, within H281DRAFT_03604at 111.943 kb on + strand, within H281DRAFT_03604at 112.154 kb on - strand, within H281DRAFT_03604at 112.154 kb on - strand, within H281DRAFT_03604at 112.629 kb on - strand, within H281DRAFT_03604at 112.939 kb on - strand, within H281DRAFT_03604at 112.960 kb on - strand, within H281DRAFT_03604at 113.035 kb on + strand, within H281DRAFT_03604at 113.035 kb on + strand, within H281DRAFT_03604at 113.036 kb on - strand, within H281DRAFT_03604at 113.194 kb on + strand, within H281DRAFT_03604at 113.276 kb on - strand, within H281DRAFT_03604at 113.290 kb on + strand, within H281DRAFT_03604at 113.290 kb on + strand, within H281DRAFT_03604at 113.493 kb on - strand, within H281DRAFT_03604at 113.649 kb on + strand, within H281DRAFT_03604at 113.650 kb on - strand, within H281DRAFT_03604at 113.650 kb on - strand, within H281DRAFT_03604at 113.650 kb on - strand, within H281DRAFT_03604at 113.650 kb on - strand, within H281DRAFT_03604at 113.717 kb on + strandat 113.718 kb on - strandat 113.718 kb on - strandat 113.718 kb on - strandat 113.718 kb on - strandat 113.774 kb on - strandat 113.935 kb on + strandat 113.936 kb on - strandat 113.984 kb on + strandat 113.985 kb on - strandat 113.985 kb on - strandat 114.013 kb on + strandat 114.042 kb on + strandat 114.043 kb on - strandat 114.043 kb on - strandat 114.043 kb on - strandat 114.043 kb on - strandat 114.043 kb on - strandat 114.058 kb on - strandat 114.088 kb on + strandat 114.165 kb on + strandat 114.166 kb on - strandat 114.192 kb on + strandat 114.193 kb on - strandat 114.250 kb on + strandat 114.293 kb on + strandat 114.369 kb on + strandat 114.370 kb on - strandat 114.395 kb on + strandat 114.396 kb on - strandat 114.396 kb on - strandat 114.396 kb on - strandat 114.396 kb on - strandat 114.495 kb on - strandat 114.495 kb on - strandat 114.571 kb on + strandat 114.571 kb on + strandat 114.572 kb on - strandat 114.572 kb on - strandat 114.685 kb on + strand, within H281DRAFT_03605at 114.685 kb on + strand, within H281DRAFT_03605at 114.685 kb on + strand, within H281DRAFT_03605at 114.685 kb on + strand, within H281DRAFT_03605at 114.718 kb on + strand, within H281DRAFT_03605at 114.719 kb on - strand, within H281DRAFT_03605at 114.779 kb on - strand, within H281DRAFT_03605at 114.870 kb on - strand, within H281DRAFT_03605at 114.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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110,822 + H281DRAFT_03603 0.46 -0.5
110,822 + H281DRAFT_03603 0.46 -1.0
110,823 - H281DRAFT_03603 0.46 +0.1
110,823 - H281DRAFT_03603 0.46 -0.1
110,841 + H281DRAFT_03603 0.48 -0.4
110,842 - H281DRAFT_03603 0.48 +0.7
111,145 + H281DRAFT_03603 0.76 +1.1
111,145 + H281DRAFT_03603 0.76 -2.4
111,146 - H281DRAFT_03603 0.76 +0.1
111,235 + H281DRAFT_03603 0.84 +0.2
111,235 + H281DRAFT_03603 0.84 -0.5
111,235 + H281DRAFT_03603 0.84 -1.6
111,236 - H281DRAFT_03603 0.84 +0.5
111,337 + +0.3
111,337 + +1.3
111,338 - +1.0
111,338 - -0.3
111,340 + +1.7
111,340 + -0.0
111,340 + +0.7
111,340 + +0.9
111,371 + +0.8
111,372 - -1.1
111,372 - -0.8
111,372 - -0.7
111,372 - -1.5
111,372 - +0.1
111,375 + +0.7
111,375 + +1.4
111,375 + +0.1
111,376 - +1.1
111,396 + -0.0
111,396 + +0.0
111,396 + +0.8
111,580 + +1.5
111,649 + +1.1
111,649 + +0.3
111,649 + -1.8
111,650 - +0.7
111,797 - -0.6
111,797 - -0.7
111,819 + -0.5
111,820 - +0.3
111,881 + H281DRAFT_03604 0.10 +0.6
111,881 + H281DRAFT_03604 0.10 +0.7
111,881 + H281DRAFT_03604 0.10 +2.5
111,882 - H281DRAFT_03604 0.10 +0.4
111,882 - H281DRAFT_03604 0.10 +1.0
111,882 - H281DRAFT_03604 0.10 +0.6
111,943 + H281DRAFT_03604 0.13 +1.9
112,154 - H281DRAFT_03604 0.22 +0.1
112,154 - H281DRAFT_03604 0.22 +0.6
112,629 - H281DRAFT_03604 0.43 -0.2
112,939 - H281DRAFT_03604 0.57 +1.6
112,960 - H281DRAFT_03604 0.57 -0.8
113,035 + H281DRAFT_03604 0.61 -2.6
113,035 + H281DRAFT_03604 0.61 +0.4
113,036 - H281DRAFT_03604 0.61 -1.8
113,194 + H281DRAFT_03604 0.68 +3.2
113,276 - H281DRAFT_03604 0.71 -0.4
113,290 + H281DRAFT_03604 0.72 -0.1
113,290 + H281DRAFT_03604 0.72 -0.5
113,493 - H281DRAFT_03604 0.81 +0.6
113,649 + H281DRAFT_03604 0.88 -0.8
113,650 - H281DRAFT_03604 0.88 -2.0
113,650 - H281DRAFT_03604 0.88 -0.4
113,650 - H281DRAFT_03604 0.88 +0.4
113,650 - H281DRAFT_03604 0.88 -1.2
113,717 + -0.7
113,718 - +0.3
113,718 - -0.5
113,718 - +0.7
113,718 - +1.5
113,774 - +1.7
113,935 + -1.0
113,936 - +0.4
113,984 + +1.4
113,985 - -0.3
113,985 - -0.3
114,013 + -0.7
114,042 + +0.9
114,043 - +0.4
114,043 - -0.1
114,043 - +0.9
114,043 - +0.1
114,043 - +0.7
114,058 - +0.2
114,088 + +0.7
114,165 + -0.4
114,166 - -1.1
114,192 + -1.9
114,193 - +1.0
114,250 + +0.1
114,293 + -0.4
114,369 + +0.6
114,370 - +0.8
114,395 + -1.0
114,396 - -0.3
114,396 - +0.2
114,396 - +1.0
114,396 - +1.3
114,495 - +1.0
114,495 - +0.6
114,571 + -2.3
114,571 + -2.4
114,572 - -2.4
114,572 - +0.4
114,685 + H281DRAFT_03605 0.25 +0.5
114,685 + H281DRAFT_03605 0.25 +0.5
114,685 + H281DRAFT_03605 0.25 -0.0
114,685 + H281DRAFT_03605 0.25 +0.0
114,718 + H281DRAFT_03605 0.34 +0.4
114,719 - H281DRAFT_03605 0.34 +0.8
114,779 - H281DRAFT_03605 0.51 -1.4
114,870 - H281DRAFT_03605 0.75 +0.8
114,924 - -0.1

Or see this region's nucleotide sequence